HHsearch alignment for GI: 254780877 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.50 E-value=1.4e-06 Score=72.37 Aligned_cols=198 Identities=18% Similarity=0.253 Sum_probs=117.1
Q ss_pred CCCH-HHHHHHHHHHHCCC-CC--CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf 3335-78999999963367-77--86689528874077799999998734899844457437887313542174542024
Q gi|254780877|r 180 VIGR-DDEMRRAIQVLSRR-TK--NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255 (853)
Q Consensus 180 VIGR-e~EI~~~~~iL~r~-~k--~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~ 255 (853)
T Consensus 11 ~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~-----~~~~v~yl~~~~~~~~-~~~~l~ 84 (219)
T pfam00308 11 VIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNF-----PNLRVVYLTSEEFLND-FVDALR 84 (219)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEEHHHHHHH-HHHHHH
T ss_conf 2368389999999999967587678269988999988899999999999849-----9982888439999998-899998
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE-CHHHHHHHHHCCHHHHHCC-
Q ss_conf 54589999998607997699963627730266655433588887653124660489974-4899999730011132023-
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT-TLDEYRKYIEKDPALARRF- 333 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT-T~~Eyrk~iEkD~Al~RRF- 333 (853)
T Consensus 85 ~~~~~~f~~~l~~~d---~l~iDDi~~l~~~~~~ee--~lf~l~N~~~~~~~~lllts~~~p~~l-~~~~~d--L~SRL~ 156 (219)
T pfam00308 85 DNKIEAFKKSYRNVD---LLLIDDIQFLAGKEKTQE--EFFHTFNALHENNKQIVLTSDRPPKEL-EGFEDR--LRSRFE 156 (219)
T ss_pred CCCHHHHHHHHHHCC---HHHHCCHHHHCCCHHHHH--HHHHHHHHHHHCCCEEEEECCCCCCCC-CCCCHH--HHHHHH
T ss_conf 188889999976323---365223676568647899--999999999972986999779981002-453277--999986
Q ss_pred --CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --11111577767899999997898654149610158999998633320245767477899999999987
Q gi|254780877|r 334 --QSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARV 401 (853)
Q Consensus 334 --q~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~ 401 (853)
T Consensus 157 ~g~~~~i~~pdd~~~~~iL~~~a----~~r~l~l~~~v~~yl~~r~~R~------~r~L~~~L~~L~~~~ 216 (219)
T pfam00308 157 WGLIIAIEPPDLETRLAILRKKA----EEENINIPNEVLNFIAQRITDN------VRELEGALNRLLAFA 216 (219)
T ss_pred CCEEEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHHH
T ss_conf 87566116999999999999999----9849999999999999842798------999999999999855