HHsearch alignment for GI: 254780877 and conserved domain: pfam02861
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=98.22 E-value=3.4e-06 Score=69.32 Aligned_cols=52 Identities=33% Similarity=0.502 Sum_probs=49.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999998289963389999998618876689999973999899999999999
Q gi|254780877|r 17 AQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVL 68 (853)
Q Consensus 17 A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L 68 (853)
T Consensus 1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~~~ 52 (53)
T pfam02861 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52 (53)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9888978699853499999999865885899999995989999999999870