HHsearch alignment for GI: 254780877 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.17 E-value=0.00015 Score=56.04 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCCHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHH--HCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCC
Q ss_conf 6761078864-4356998729853333357899999996--3367778668952887407779999999873----4899
Q gi|254780877|r 156 QGFDALKKYC-RDLTEEARNGKLDPVIGRDDEMRRAIQV--LSRRTKNNPVLIGDPGVGKTAIIEGLASRII----NGDI 228 (853)
Q Consensus 156 ~~~~~L~ky~-~DLTe~Ar~GkLDPVIGRe~EI~~~~~i--L~r~~k~n~~lvGe~GvGKtaive~la~~i~----~~~v 228 (853)
T Consensus 5 ~~epW~ekyaP~~l~ELAVHKK------KV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~N 78 (490)
T pfam03215 5 EHELWTEKYKPRRRDELAIHKK------KIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSN 78 (490)
T ss_pred CCCCCHHHCCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 3586414308887899855354------3999999999985477773189987989988999999999975968998148
Q ss_pred CHHHCCCEE-EEEEH---HHHHCCCCCCCHHHHHHHHHHHH--HH-HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 844457437-88731---35421745420245458999999--86-0799769996362773026665543358888765
Q gi|254780877|r 229 PESLKGKRL-MALDM---GALIAGAKFRGEFEERLKSLLCE--IR-SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKP 301 (853)
Q Consensus 229 p~~l~~~~i-~~ld~---~~l~ag~~~rg~~e~r~~~i~~~--~~-~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP 301 (853)
T Consensus 79 P~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~-~d---~~~fr~~L~~ 154 (490)
T pfam03215 79 PEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFY-SD---AEKFREVIRE 154 (490)
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC-CC---HHHHHHHHHH
T ss_conf 6545677502210121234576666377776788762233565445788735999965887442-36---6999999999
Q ss_pred HHCCCC
Q ss_conf 312466
Q gi|254780877|r 302 SLARGE 307 (853)
Q Consensus 302 ~LarG~ 307 (853)
T Consensus 155 ~L~s~~ 160 (490)
T pfam03215 155 VLQSIW 160 (490)
T ss_pred HHHHCC
T ss_conf 997089