HHsearch alignment for GI: 254780877 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.73 E-value=0.0024 Score=46.15 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=81.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHH-----------HHHHHHHHHHCC
Q ss_conf 689528874077799999998734899844457437887313542174542024545-----------899999986079
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEER-----------LKSLLCEIRSED 270 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r-----------~~~i~~~~~~~~ 270 (853)
T Consensus 3 i~i~G~aG~GKTtll~kl~~~wa~g~~~~~--~~~vf~~~~r~~~~-~~~~-sl~~ll~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T pfam05729 3 VILQGEAGSGKTTLLQKLALLWAQGKLPQD--FDFVFFLPCRELSR-SGEA-SLADLLFSQWPEPAAPVSEVWAVILELP 78 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCC--CCEEEEEEHHHHCC-CCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 999827989899999999999986984369--72899999567077-7668-9999999876774576378999998397
Q ss_pred CCEEEEECCHHHHCCCCCC-CCCCC----HHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHH
Q ss_conf 9769996362773026665-54335----888876531246604899744899999730011132023111115777678
Q gi|254780877|r 271 GEIILFIDELHVLVGAGKT-DGAMD----ASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTD 345 (853)
Q Consensus 271 ~~~ilfide~h~~~gaG~~-~g~~D----aan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~ 345 (853)
T Consensus 79 ~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~-~~vliTsRp~~~~~----l~~~~~~~~~~ei~GFs~~~ 153 (165)
T pfam05729 79 ERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPG-ASLLLTSRPDALRD----LRRGLEEPRYLEVLGFSEED 153 (165)
T ss_pred CCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEEECCCHHHH----HHHHCCCCCEEEECCCCHHH
T ss_conf 72899964845514443564445779999999984152788-64999968037988----57764887189988999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780877|r 346 TISIL 350 (853)
Q Consensus 346 t~~iL 350 (853)
T Consensus 154 ~~~yi 158 (165)
T pfam05729 154 RKQYV 158 (165)
T ss_pred HHHHH
T ss_conf 99999