HHsearch alignment for GI: 254780877 and conserved domain: pfam05729

>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.98  E-value=0.0072  Score=42.28  Aligned_cols=141  Identities=21%  Similarity=0.268  Sum_probs=78.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHCCC--CCCCHHHCCCCHHCCCCCCCCCCH---HHHCC
Q ss_conf             89872678616889999999872-----377653002244774034--532013047711203566774211---32215
Q gi|254780877|r  600 SFMFLGPTGVGKTELVKSLARLL-----FDDENSMIRIDMSEYMEK--HSVSRLIGSPPGYVGYEEGGALTE---AVRRH  669 (853)
Q Consensus       600 ~flf~GptGvGKTelak~la~~l-----f~~~~~lir~dMsey~e~--~~vs~LiGappGYvG~~~gg~Lte---~vr~~  669 (853)
T Consensus         2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~----~~~~~~~~~~~~~~~~   77 (165)
T pfam05729         2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWP----EPAAPVSEVWAVILEL   77 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCC----CCCCCHHHHHHHHHHC
T ss_conf             899982798989999999999998698436972899999567077766899999998767----7457637899999839


Q ss_pred             C-CCEEEEHHHHHCCH---------HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHH
Q ss_conf             6-41022021441498---------9999999984045788799977830331559548512687640326799999999
Q gi|254780877|r  670 P-YQVVLFDEIEKAHS---------DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGI  739 (853)
Q Consensus       670 P-~sVil~DEiEKah~---------~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~  739 (853)
T Consensus        78 ~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~----------~~~lp~~~vliTsRp~~~--------------~~  133 (165)
T pfam05729        78 PERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLR----------KKLLPGASLLLTSRPDAL--------------RD  133 (165)
T ss_pred             CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHH----------HCCCCCCEEEEEECCCHH--------------HH
T ss_conf             772899964845514443564445779999999984----------152788649999680379--------------88


Q ss_pred             HHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf             98628857726668158628899899999999999
Q gi|254780877|r  740 VRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL  774 (853)
Q Consensus       740 l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l  774 (853)
T Consensus       134 l~~~~~~------~~~~ei~GFs~~~~~~yi~~~F  162 (165)
T pfam05729       134 LRRGLEE------PRYLEVLGFSEEDRKQYVRKYF  162 (165)
T ss_pred             HHHHCCC------CCEEEECCCCHHHHHHHHHHHC
T ss_conf             5776488------7189988999999999999867