HHsearch alignment for GI: 254780877 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.98 E-value=0.0072 Score=42.28 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=78.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHCCC--CCCCHHHCCCCHHCCCCCCCCCCH---HHHCC
Q ss_conf 89872678616889999999872-----377653002244774034--532013047711203566774211---32215
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLL-----FDDENSMIRIDMSEYMEK--HSVSRLIGSPPGYVGYEEGGALTE---AVRRH 669 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~l-----f~~~~~lir~dMsey~e~--~~vs~LiGappGYvG~~~gg~Lte---~vr~~ 669 (853)
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~----~~~~~~~~~~~~~~~~ 77 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWP----EPAAPVSEVWAVILEL 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCC----CCCCCHHHHHHHHHHC
T ss_conf 899982798989999999999998698436972899999567077766899999998767----7457637899999839
Q ss_pred C-CCEEEEHHHHHCCH---------HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHH
Q ss_conf 6-41022021441498---------9999999984045788799977830331559548512687640326799999999
Q gi|254780877|r 670 P-YQVVLFDEIEKAHS---------DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGI 739 (853)
Q Consensus 670 P-~sVil~DEiEKah~---------~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~ 739 (853)
T Consensus 78 ~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~----------~~~lp~~~vliTsRp~~~--------------~~ 133 (165)
T pfam05729 78 PERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLR----------KKLLPGASLLLTSRPDAL--------------RD 133 (165)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHH----------HCCCCCCEEEEEECCCHH--------------HH
T ss_conf 772899964845514443564445779999999984----------152788649999680379--------------88
Q ss_pred HHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 98628857726668158628899899999999999
Q gi|254780877|r 740 VRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 740 l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
T Consensus 134 l~~~~~~------~~~~ei~GFs~~~~~~yi~~~F 162 (165)
T pfam05729 134 LRRGLEE------PRYLEVLGFSEEDRKQYVRKYF 162 (165)
T ss_pred HHHHCCC------CCEEEECCCCHHHHHHHHHHHC
T ss_conf 5776488------7189988999999999999867