HHsearch alignment for GI: 254780877 and conserved domain: pfam06309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.59 E-value=1.6e-07 Score=80.17 Aligned_cols=71 Identities=21% Similarity=0.463 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 0123554776745948999999999987410123656651289872678616889999999872377--653002
Q gi|254780877|r 559 FLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD--ENSMIR 631 (853)
Q Consensus 559 Ll~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~--~~~lir 631 (853)
T Consensus 16 ~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpL-VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh 88 (127)
T pfam06309 16 YHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPL-VLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVH 88 (127)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 79999999875347798999999999999748-9999974-8870189998798999999999875434787568