HHsearch alignment for GI: 254780877 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.82 E-value=0.00011 Score=57.19 Aligned_cols=94 Identities=27% Similarity=0.384 Sum_probs=63.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC--------C--CCCCCHHHHHHHHHHHHHH
Q ss_conf 77866895288740777999999987348998444574378873135421--------7--4542024545899999986
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA--------G--AKFRGEFEERLKSLLCEIR 267 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g--~~~rg~~e~r~~~i~~~~~ 267 (853)
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~-------~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G--~l~~~v~ 72 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLFGDER-------ALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG--QLTEAVR 72 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-------CEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CHHHHHH
T ss_conf 8379998898998999999999999679853-------448855756542569998705899872624265--0789998
Q ss_pred HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 079976999636277302666554335888876531246604
Q gi|254780877|r 268 SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELH 309 (853)
Q Consensus 268 ~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~ 309 (853)
T Consensus 73 ~~p-~~VillDEIeKa--------~~~V~~~LL~ild~g~~~ 105 (168)
T pfam07724 73 RKP-YSIVLIDEIEKA--------HPGVQNDLLQILEGGTLT 105 (168)
T ss_pred HCC-CCEEEEHHHHHH--------CHHHHHHHHHHCCCCCEE
T ss_conf 389-848986577665--------899999999870587063