HHsearch alignment for GI: 254780877 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.82  E-value=0.00011  Score=57.19  Aligned_cols=94  Identities=27%  Similarity=0.384  Sum_probs=63.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC--------C--CCCCCHHHHHHHHHHHHHH
Q ss_conf             77866895288740777999999987348998444574378873135421--------7--4542024545899999986
Q gi|254780877|r  198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA--------G--AKFRGEFEERLKSLLCEIR  267 (853)
Q Consensus       198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g--~~~rg~~e~r~~~i~~~~~  267 (853)
T Consensus         2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~-------~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G--~l~~~v~   72 (168)
T pfam07724         2 PIGSFLFLGPTGVGKTELAKALAELLFGDER-------ALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG--QLTEAVR   72 (168)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-------CEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CHHHHHH
T ss_conf             8379998898998999999999999679853-------448855756542569998705899872624265--0789998


Q ss_pred             HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             079976999636277302666554335888876531246604
Q gi|254780877|r  268 SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELH  309 (853)
Q Consensus       268 ~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~  309 (853)
T Consensus        73 ~~p-~~VillDEIeKa--------~~~V~~~LL~ild~g~~~  105 (168)
T pfam07724        73 RKP-YSIVLIDEIEKA--------HPGVQNDLLQILEGGTLT  105 (168)
T ss_pred             HCC-CCEEEEHHHHHH--------CHHHHHHHHHHCCCCCEE
T ss_conf             389-848986577665--------899999999870587063