HHsearch alignment for GI: 254780877 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.41 E-value=1e-12 Score=122.26 Aligned_cols=113 Identities=31% Similarity=0.510 Sum_probs=86.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCC---CHHCCCCCCCCCCHHHHCCCCCEEEEH
Q ss_conf 98726786168899999998723776530022447740345320130477---112035667742113221564102202
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSP---PGYVGYEEGGALTEAVRRHPYQVVLFD 677 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGap---pGYvG~~~gg~Lte~vr~~P~sVil~D 677 (853)
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~--~~~~~i~~~~~~~~---~dl~G~~~~~~~~~~~~~-g~l~~a~~~-g-~vl~lD 73 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSN--RPVFYVQLTRDTTE---EDLKGRRNIANGTTSWVD-GPLVRAARE-G-EIAVLD 73 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC--CCCHHHCCCCCCCH---HHCCCCEECCCCCEEEEC-CHHHCCCCC-C-CEEEEC
T ss_conf 899989975699999999998079--83111214655652---220573423799357815-514101012-8-689963
Q ss_pred HHHHCCHHHHHHHHHHHHCCEEECCCC-CEEEC------CCCEEEECCCHH
Q ss_conf 144149899999999840457887999-77830------331559548512
Q gi|254780877|r 678 EIEKAHSDVHNILLQVLDDGRLTDSQG-RTVDF------RNTLIIMTSNLG 721 (853)
Q Consensus 678 EiEKah~~v~~~llqild~G~ltd~~G-~~v~f------~n~iii~TsN~G 721 (853)
T Consensus 74 Ein~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~ 124 (139)
T pfam07728 74 EINRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL 124 (139)
T ss_pred CHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC
T ss_conf 434489999999999974896983689727336666789996999975896