HHsearch alignment for GI: 254780877 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.46  E-value=9.7e-08  Score=81.85  Aligned_cols=119  Identities=24%  Similarity=0.275  Sum_probs=72.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH---HH-CCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf             28987267861688999999987237765300224477403453201---30-477112035667742113221564102
Q gi|254780877|r  599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR---LI-GSPPGYVGYEEGGALTEAVRRHPYQVV  674 (853)
Q Consensus       599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~---Li-GappGYvG~~~gg~Lte~vr~~P~sVi  674 (853)
T Consensus         3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL   82 (148)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             78999999970299999999987266899689987599898889876530001122105199999999999984499899


Q ss_pred             EEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf             2021441498999999998404578879997783033155954851
Q gi|254780877|r  675 LFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL  720 (853)
Q Consensus       675 l~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~  720 (853)
T Consensus        83 iiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vi~~~n~  125 (148)
T smart00382       83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             EEECCHHHCCCCCHHHHHHHHH---HHHHCCCCCCCCEEEEEEECC
T ss_conf             9827502147620799999999---998517657899899995699