RPSBLAST alignment for GI: 254780877 and conserved domain: TIGR03345
>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Length = 852
Score = 737 bits (1904), Expect = 0.0
Identities = 331/868 (38%), Positives = 503/868 (57%), Gaps = 48/868 (5%)
Query: 7 SDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQT 66
+ R L+ A +A+GH + EH L L+ + ++++ G D+ +LK
Sbjct: 2 NPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLAR 61
Query: 67 VLSKIPKVTGGGAQVYLSQPLAVILSKSEEIAK-KSGDSFVTAEKFLLAMVMETGGIGES 125
L K+P G S L +L ++ +A + GD + + LLA++ +
Sbjct: 62 ALDKLP--RGNTRTPVFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLL 119
Query: 126 LKKCGLKFSRLE-ESIKKLRKGRVADSVNAEQ---------------GFDALKKYCRDLT 169
++++ E++++ V S A G AL +Y DLT
Sbjct: 120 GSISPE-LAKIDREALREALPALVEGSAEASAAAADAGPAAAAAGAAGTSALDQYTTDLT 178
Query: 170 EEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP 229
+AR GK+DPV+GRDDE+R+ I +L RR +NNP+L G+ GVGKTA++EGLA RI GD+P
Sbjct: 179 AQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238
Query: 230 ESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKT 289
+L+ RL++LD+G L AGA +GEFE RLKS++ E+++ IILFIDE H L+GAG
Sbjct: 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ 298
Query: 290 DGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISI 349
G DA+NLLKP+LARGEL I ATT EY+KY EKDPAL RRFQ + V EP I +
Sbjct: 299 AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRM 358
Query: 350 LRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKP 409
LRGL E+HH V I D A+V+A LS+RYI R LPDKA+ L+D A ARV + + P
Sbjct: 359 LRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATP 418
Query: 410 EVLDELDRRIICLKIEKEALKKE--KDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQR 467
L++L RRI L++E +AL++E + RL EL EL++LE + +L RWQ+ +
Sbjct: 419 AALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEK- 477
Query: 468 KILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMV 527
+L + + ++R EL + + E L A E +V
Sbjct: 478 ------ELVEAILALRAELEADADA--PADDDAALRAQLAELEAALASA----QGEEPLV 525
Query: 528 QEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRF 587
V + +A +V+ WTGIPV +M+ + E L + +++ VIGQ A+E+++ +R
Sbjct: 526 FPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA 585
Query: 588 RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647
RAGL+DP++P+G F+ +GP+GVGKTE +LA LL+ E ++I I+MSE+ E H+VSRL
Sbjct: 586 RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645
Query: 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTV 707
GSPPGYVGY EGG LTEAVRR PY VVL DE+EKAH DV + QV D G + D +GR +
Sbjct: 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREI 705
Query: 708 DFRNTLIIMTSNLGAEYLIE---------DGDSVHDKVMGIVRSAFKPEFLNRLDEIILF 758
DF+NT+I++TSN G++ ++ D +++ + + + FKP FL R+ +I +
Sbjct: 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM-TVIPY 764
Query: 759 EKLRKEDMAKIVRIQLGRVLSLIKER-NISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817
L + +A IVR++L R+ +KE + + + +++ + R + GAR + ++
Sbjct: 765 LPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILN 824
Query: 818 RYIQNPLAERVLSQTISDGDSIE-VFVD 844
+ + L+ ++L + ++ G+ IE + +D
Sbjct: 825 QTLLPELSRQILER-LAAGEPIERIHLD 851