RPSBLAST alignment for GI: 254780877 and conserved domain: TIGR03345

>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Length = 852
 Score =  737 bits (1904), Expect = 0.0
 Identities = 331/868 (38%), Positives = 503/868 (57%), Gaps = 48/868 (5%)

Query: 7   SDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQT 66
           +   R  L+ A    +A+GH  +  EH L   L+     + ++++  G D+ +LK     
Sbjct: 2   NPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLAR 61

Query: 67  VLSKIPKVTGGGAQVYLSQPLAVILSKSEEIAK-KSGDSFVTAEKFLLAMVMETGGIGES 125
            L K+P   G       S  L  +L ++  +A  + GD  + +   LLA++ +       
Sbjct: 62  ALDKLP--RGNTRTPVFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLL 119

Query: 126 LKKCGLKFSRLE-ESIKKLRKGRVADSVNAEQ---------------GFDALKKYCRDLT 169
                   ++++ E++++     V  S  A                 G  AL +Y  DLT
Sbjct: 120 GSISPE-LAKIDREALREALPALVEGSAEASAAAADAGPAAAAAGAAGTSALDQYTTDLT 178

Query: 170 EEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP 229
            +AR GK+DPV+GRDDE+R+ I +L RR +NNP+L G+ GVGKTA++EGLA RI  GD+P
Sbjct: 179 AQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238

Query: 230 ESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKT 289
            +L+  RL++LD+G L AGA  +GEFE RLKS++ E+++    IILFIDE H L+GAG  
Sbjct: 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ 298

Query: 290 DGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISI 349
            G  DA+NLLKP+LARGEL  I ATT  EY+KY EKDPAL RRFQ + V EP     I +
Sbjct: 299 AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRM 358

Query: 350 LRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKP 409
           LRGL    E+HH V I D A+V+A  LS+RYI  R LPDKA+ L+D A ARV +  +  P
Sbjct: 359 LRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATP 418

Query: 410 EVLDELDRRIICLKIEKEALKKE--KDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQR 467
             L++L RRI  L++E +AL++E    +    RL EL  EL++LE +  +L  RWQ+ + 
Sbjct: 419 AALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEK- 477

Query: 468 KILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMV 527
                 +L + + ++R EL                   + + E  L  A       E +V
Sbjct: 478 ------ELVEAILALRAELEADADA--PADDDAALRAQLAELEAALASA----QGEEPLV 525

Query: 528 QEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRF 587
              V +  +A +V+ WTGIPV +M+  + E  L +   +++ VIGQ  A+E+++  +R  
Sbjct: 526 FPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA 585

Query: 588 RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647
           RAGL+DP++P+G F+ +GP+GVGKTE   +LA LL+  E ++I I+MSE+ E H+VSRL 
Sbjct: 586 RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645

Query: 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTV 707
           GSPPGYVGY EGG LTEAVRR PY VVL DE+EKAH DV  +  QV D G + D +GR +
Sbjct: 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREI 705

Query: 708 DFRNTLIIMTSNLGAEYLIE---------DGDSVHDKVMGIVRSAFKPEFLNRLDEIILF 758
           DF+NT+I++TSN G++ ++          D +++ + +   +   FKP FL R+  +I +
Sbjct: 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM-TVIPY 764

Query: 759 EKLRKEDMAKIVRIQLGRVLSLIKER-NISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817
             L  + +A IVR++L R+   +KE     + + + +++ +  R  +   GAR +  ++ 
Sbjct: 765 LPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILN 824

Query: 818 RYIQNPLAERVLSQTISDGDSIE-VFVD 844
           + +   L+ ++L + ++ G+ IE + +D
Sbjct: 825 QTLLPELSRQILER-LAAGEPIERIHLD 851