RPSBLAST alignment for GI: 254780877 and conserved domain: COG1221

>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]. Length = 403

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 48/269 (17%)

Query: 562 IETEISKSVIGQSAAVESVSNALRRF-RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLAR 620
           +++E    +IG+S +++ +   ++ +  +GL          + +G TG GK    + +  
Sbjct: 72  LKSEALDDLIGESPSLQELREQIKAYAPSGL--------PVLIIGETGTGKELFARLIHA 123

Query: 621 LLFDDENS-MIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQV------ 673
           L      +  I  + + Y E    + L G         E GA T A              
Sbjct: 124 LSARRAEAPFIAFNCAAYSENLQEAELFG--------HEKGAFTGAQGGKAGLFEQANGG 175

Query: 674 -VLFDEIEKAHSDVHNILLQVLDDG---RLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDG 729
            +  DEI +   +    LL+VL++G   R+  SQ R VD R  LI  T+    E ++   
Sbjct: 176 TLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR--LICATTEDLEEAVLAGA 233

Query: 730 DSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMD 789
           D      +  +     P    R ++I+L  +   +  A+    +LG  LS          
Sbjct: 234 DLTRRLNILTITL---PPLRERKEDILLLAEHFLKSEAR----RLGLPLS---------V 277

Query: 790 FDDQVIDWLSCRGYDPSYGARPLKRVIQR 818
              + +  L    YD     R LK +++R
Sbjct: 278 DSPEALRAL--LAYDWPGNIRELKNLVER 304