RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease,
ATP-binding subunit protein [Candidatus Liberibacter asiaticus str.
psy62]
(853 letters)
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 786
Score = 944 bits (2442), Expect = 0.0
Identities = 463/856 (54%), Positives = 592/856 (69%), Gaps = 85/856 (9%)
Query: 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYN 64
K ++ + L+ AQ A + H+ + PEH+L L+ +G L+ G D+ +L+
Sbjct: 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQEL 58
Query: 65 QTVLSKIPKVTGGGAQVYLSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMET-GGIG 123
+ + K+PKV G YLS L +L ++ +A+ GD +V+ E LLA++ E
Sbjct: 59 EEFIDKLPKVLG---SPYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAA 115
Query: 124 ESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKKYCRDLTEEARNGKLDPVIGR 183
LKK G+ +EE I++LR G DS NAE+ DAL+KY RDLTE AR GKLDPVIGR
Sbjct: 116 YILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGR 175
Query: 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243
D+E+RR IQ+LSRRTKNNPVL+G+PGVGKTAI+EGLA RI+NGD+PESLK KR+ +LD+G
Sbjct: 176 DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235
Query: 244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKT-DGAMDASNLLKPS 302
+L+AGAK+RGEFEERLK++L E+ + +ILFIDE+H +VGAG T GAMDA+NLLKP+
Sbjct: 236 SLVAGAKYRGEFEERLKAVLKEVE-KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA 294
Query: 303 LARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHK 362
LARGEL CIGATTLDEYRKYIEKD AL RRFQ +LV EP+V DTI+ILRGLKERYE HH
Sbjct: 295 LARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHG 354
Query: 363 VRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422
VRI+D ALV+A LS+RYI DRFLPDKAIDL+DEA ARVR++ID KPE LDEL+R + L
Sbjct: 355 VRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQL 413
Query: 423 KIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESM 482
+IEKEAL++E+D E EK+L
Sbjct: 414 EIEKEALEREQD--------EKEKKL---------------------------------- 431
Query: 483 RNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSR 542
+ +L G IP+ EKEL+ V D+IA +V+R
Sbjct: 432 ------------IDEIIKLKEGRIPELEKELEAE--------------VDEDDIAEVVAR 465
Query: 543 WTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFM 602
WTGIPV K+LE ++EK L +E + K VIGQ AVE+VS+A+RR RAGL DP RP+GSF+
Sbjct: 466 WTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFL 525
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGAL 662
FLGPTGVGKTEL K+LA LF DE ++IRIDMSEYMEKHSVSRLIG+PPGYVGYEEGG L
Sbjct: 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL 585
Query: 663 TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA 722
TEAVRR PY V+L DEIEKAH DV N+LLQVLDDGRLTD QGRTVDFRNT+IIMTSN G+
Sbjct: 586 TEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645
Query: 723 EYLIEDG--------DSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774
E ++ D +++ + VM ++ F+PEFLNR+DEII F L KE + +IV +QL
Sbjct: 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQL 705
Query: 775 GRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTIS 834
R+ + ER I+++ D+ D+L+ +GYDP YGARPL+R IQ+ I++PLA+ +L I
Sbjct: 706 NRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIE 765
Query: 835 DGDSIEVFVDDDNLNF 850
DG +++V VDD+ + F
Sbjct: 766 DGGTVKVDVDDEKIKF 781
>gnl|CDD|177027 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 792 bits (2048), Expect = 0.0
Identities = 376/779 (48%), Positives = 501/779 (64%), Gaps = 83/779 (10%)
Query: 90 ILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRV 148
+L S E A+ G +++ E LLA++ E G+ L+ G+ S++ I L +
Sbjct: 87 VLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEII 146
Query: 149 ADSVNAEQGFD---ALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLI 205
+ AEQ L+++ +LT+EA +G LDPVIGR+ E+ R IQ+L RRTKNNP+LI
Sbjct: 147 EAILGAEQSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILI 206
Query: 206 GDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCE 265
G+PGVGKTAI EGLA RI+N D+P+ L+ K ++ LD+G L+AG K+RGEFEERLK + E
Sbjct: 207 GEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDE 266
Query: 266 IRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEK 325
I+ E+ IIL IDE+H L+GAG +GA+DA+N+LKP+LARGEL CIGATTLDEYRK+IEK
Sbjct: 267 IQ-ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 325
Query: 326 DPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRF 385
DPAL RRFQ + VGEP+V +TI IL GL+ RYE+HH + ISD AL +AA LS++YI DRF
Sbjct: 326 DPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRF 385
Query: 386 LPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELE 445
LPDKAIDL+DEA +RVR+ P ELD+ E + K+KD + + E
Sbjct: 386 LPDKAIDLLDEAGSRVRLINSRLPPAARELDK-------ELREILKDKDEAIREQDFETA 438
Query: 446 KELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGL 505
K+L + + +R Q
Sbjct: 439 KQL-----RDREMEVRAQ---------------------------------------IAA 454
Query: 506 IPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETE 565
I +++K +E VVT ++IA IVS WTGIPV+K+ +S+ EK L +E
Sbjct: 455 IIQSKKTEEEKRLEVP--------VVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEET 506
Query: 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD 625
+ K +IGQ AV +VS A+RR R GL++P RP+ SF+F GPTGVGKTEL K+LA F
Sbjct: 507 LHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566
Query: 626 ENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSD 685
E++MIR+DMSEYMEKH+VS+LIGSPPGYVGY EGG LTEAVR+ PY VVLFDEIEKAH D
Sbjct: 567 EDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPD 626
Query: 686 VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDS-------------- 731
+ N+LLQ+LDDGRLTDS+GRT+DF+NTLIIMTSNLG++ +IE
Sbjct: 627 IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSK-VIETNSGGLGFELSENQLSEK 685
Query: 732 ----VHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787
+ + V ++ F+PEFLNRLDEII+F +L K D+ +I I L + + E+ I
Sbjct: 686 QYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQ 745
Query: 788 MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDD 846
++ +++ L GY+P YGARPL+R I R +++PLAE VLS I GD I V V+D+
Sbjct: 746 LEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDE 804
Score = 29.3 bits (66), Expect = 4.2
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 89 VILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIGES-LKKCGLKFSRLEESIKKL 143
++LS+ E A++ G +FV E+ LL ++ E GI LK G+ ++K+
Sbjct: 13 IMLSQEE--ARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKI 66
>gnl|CDD|36269 KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related
ATP-dependent Clp proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 898
Score = 691 bits (1785), Expect = 0.0
Identities = 373/859 (43%), Positives = 502/859 (58%), Gaps = 47/859 (5%)
Query: 12 NVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTV---L 68
VL+ A T A +GH + P HV L G + S Q + L
Sbjct: 18 TVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHP--LQCRALELCFNVSL 75
Query: 69 SKIPKVTGGGAQVYLSQPLAVILSKSEEIAKKSGDSFVTAE-KFLLAMVMETGGIGESLK 127
+++P G L L + ++ V E + L+ +++ + ++
Sbjct: 76 NRLPTSYGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMR 135
Query: 128 KCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKKYCRDLTEEARNGKLDPVIGR-DDE 186
+ G S ++ ++++ + S L+ Y DLT AR GKLDPVIGR D+E
Sbjct: 136 EAGFSSSAVKSAVEQPVGQFRSPSRGPLWPLLFLENYGTDLTPRARQGKLDPVIGRHDEE 195
Query: 187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALI 246
+RR I++LSR+TKNNPVL+G+PGVGKTAI+EGLA RI GD+PE+LK K+L+ALD G+L+
Sbjct: 196 IRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255
Query: 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG 306
AGAK RGEFEERLK LL E+ S G +ILF+ ELH LVG+G GA+DA+NLLKP LARG
Sbjct: 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARG 315
Query: 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRIS 366
L CIGATTL+ YRK IEKDPAL RR+Q +LV P+V + IL GL ERYE HH VRIS
Sbjct: 316 GLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRIS 375
Query: 367 DSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEK 426
D +L SAA LS RYIT FLPD AIDL DEA+A V+ Q ++ P L L+R I L+ E
Sbjct: 376 DESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEI 435
Query: 427 EALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNEL 486
L+K+ + R + L+ + L+ + I + K L+ L
Sbjct: 436 SELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-L 492
Query: 487 AIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGI 546
A A R + R +L YG IP E +I+ +VSRWTGI
Sbjct: 493 AKAHRPNDYTRETDLRYGRIPDELSEKSN------------DNQGGESDISEVVSRWTGI 540
Query: 547 PVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGP 606
PVD++ E++ E+ ++E + + VIGQ AV +++ A+RR RAGL+DP P F+FLGP
Sbjct: 541 PVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPN-PDAWFLFLGP 599
Query: 607 TGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAV 666
GVGKTEL K+LA +F E + IR+DMSE+ E VS+LIGSPPGYVG EEGG LTEAV
Sbjct: 600 DGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAV 656
Query: 667 RRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI 726
+R PY VVLF+EIEKAH DV NILLQ+LD GRLTDS GR VDF+N + IMTSN+G+ +
Sbjct: 657 KRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIA 716
Query: 727 EDG--------------------DSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDM 766
D V D V + F+ EFLNR+DE+ L L ++++
Sbjct: 717 NDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDEL 776
Query: 767 AKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAE 826
+IV QL + ++ER + + D+V D + +GYD YGARP+KR I+ +N LAE
Sbjct: 777 IEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAE 836
Query: 827 RVLSQTISDGDSIEVFVDD 845
+L + + DG + + V D
Sbjct: 837 ALLGE-VEDGLTERILVAD 854
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 84.5 bits (209), Expect = 1e-16
Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 39/190 (20%)
Query: 571 IGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI 630
+GQ A+E++ AL P + + GP G GKT L +++A LF +
Sbjct: 1 VGQEEAIEALREALEL---------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51
Query: 631 RIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNIL 690
++ S+ +E V+ L G+ L E + V+ DEI+ N L
Sbjct: 52 YLNASDLLEGLVVAELF-------GHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNAL 104
Query: 691 LQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLN 750
L+VL+ +D N +I +N +
Sbjct: 105 LRVLETLNDL-----RIDRENVRVIGATNRPLLGD------------------LDRALYD 141
Query: 751 RLDEIILFEK 760
RLD I+
Sbjct: 142 RLDIRIVIPL 151
Score = 82.6 bits (204), Expect = 4e-16
Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 181 IGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL 240
+G+++ + + L N +L G PG GKT + +A+ + G + L
Sbjct: 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYL 53
Query: 241 DMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLK 300
+ L+ G F L LL E+ + +LFIDE+ L G + + L
Sbjct: 54 NASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLN 112
Query: 301 PSLA-RGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEP 341
R + IGAT D AL R +V
Sbjct: 113 DLRIDRENVRVIGATNRPLLGD---LDRALYDRLDIRIVIPL 151
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 64.4 bits (156), Expect = 1e-10
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 551 MLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVG 610
LE E +I +E+ K V+G +E AL G + GP GVG
Sbjct: 7 PLERVAEILGKIRSELEKVVVGDEEVIELALLALLA-----------GGHVLLEGPPGVG 55
Query: 611 KTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHP 670
KT L ++LAR L +RI + + + + E + +
Sbjct: 56 KTLLARALARALGLP---FVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAV 112
Query: 671 YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRN-TLIIMTSN 719
++L DEI +A +V N LL+ L++ ++T T+ ++I T N
Sbjct: 113 RVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN 162
Score = 39.3 bits (91), Expect = 0.004
Identities = 56/321 (17%), Positives = 100/321 (31%), Gaps = 38/321 (11%)
Query: 178 DPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRL 237
V+G ++ + A+ L+ + +L G PGVGKT + LA R + L
Sbjct: 24 KVVVGDEEVIELAL--LALLAGGHVLLEGPPGVGKTLLARALA-RALGLPFVRIQCTPDL 80
Query: 238 MALDM-GALIAGAKFRGEFEERLKS--LLCEIRSEDGEIILFIDELHVLVGAGKTDGAMD 294
+ D+ G A E R L +R IL +DE+ +
Sbjct: 81 LPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV-----ILLLDEI--------NRAPPE 127
Query: 295 ASNLLKPSLARGELHCIGATTLDEYRKYI--------------EKDPALARRFQSLLVGE 340
N L +L ++ G TT+ +I AL RF + +
Sbjct: 128 VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVD 187
Query: 341 PTVTDT--ISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398
++ IL + E + + + + + + D+ ID +
Sbjct: 188 YPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLV 247
Query: 399 ARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSL 458
A +R D L R + L AL + +L +
Sbjct: 248 AALREAPD---VALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAHRLILE 304
Query: 459 TLRWQEGQRKILYVADLKKRL 479
G + V ++ +R+
Sbjct: 305 LEAKLSGLSVLDIVREILERV 325
>gnl|CDD|37381 KOG2170, KOG2170, KOG2170, ATPase of the AAA+ superfamily [General
function prediction only].
Length = 344
Score = 54.5 bits (131), Expect = 1e-07
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 562 IETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARL 621
+E ++++++ GQ A + V NAL+ A +P++P+ F G TG GK + + +A
Sbjct: 76 LEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPL-VLSFHGWTGTGKNYVAEIIAEN 133
Query: 622 LFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVG-YEE--GGALTEAVRRHPYQVVLFDE 678
L+ S ++ H V+ L + Y+E + V+ + +FDE
Sbjct: 134 LYRG------GLRSPFV-HHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDE 186
Query: 679 IEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723
++K + ++L LD Q VDFR + I SN G
Sbjct: 187 VDKLPPGLLDVLKPFLD----YYPQVSGVDFRKAIFIFLSNAGGS 227
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 54.5 bits (132), Expect = 1e-07
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 29/144 (20%)
Query: 204 LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLL 263
L G PG GKT + + +A + G + + L+ +K+ GE E+RL+ L
Sbjct: 3 LYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV--SKYVGESEKRLRELF 50
Query: 264 CEIRSEDGEIILFIDELHVLVGAGKTDG---AMDASNLL-----KPSLARGELHCIGATT 315
+ ++FIDE+ L G+ + G + N L + + ++ I AT
Sbjct: 51 EAAKKLAP-CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATN 109
Query: 316 LDEYRKYIEK-DPALAR-RFQSLL 337
+K DPAL R RF ++
Sbjct: 110 ------RPDKLDPALLRGRFDRII 127
Score = 41.4 bits (98), Expect = 0.001
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 32/129 (24%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGA 661
+ GP G GKT L K++A+ L I I SE + K+ +G +
Sbjct: 2 LLYGPPGTGKTTLAKAVAKELGAP---FIEISGSELVSKY-----VGESEKRL-----RE 48
Query: 662 LTEAVRRHPYQVVLFDEIEK-----------AHSDVHNILLQVLDDGRLTDSQGRTVDFR 710
L EA ++ V+ DEI+ V N LL LD G T
Sbjct: 49 LFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELD--------GFTSSLS 100
Query: 711 NTLIIMTSN 719
++I +N
Sbjct: 101 KVIVIAATN 109
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 45.5 bits (107), Expect = 6e-05
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSP-PGYVGYEEGG 660
G G GK+ L+ L ++ I + E + + SP PG + +G
Sbjct: 153 YLEGGRGSGKSFLISELCDEGGQ---RIVEIHLREITDAKVLIGTYTSPKPGDFEWMKG- 208
Query: 661 ALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT-DSQGRTVDFRNTLIIMTSN 719
L EAV + +LF I+KA V + LL +L+ RL S+G TV + I ++
Sbjct: 209 VLIEAVVSGDW--ILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFTS 266
Query: 720 LGAEYLI 726
++
Sbjct: 267 SMKTKIL 273
Score = 43.9 bits (103), Expect = 2e-04
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 605 GPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME-KHSVSRLIGSPPGYVGYEEGGALT 663
GPT GKT ++ LAR + +RI+ E+ + + + + G + ++EG L
Sbjct: 895 GPTSSGKTSMILYLARET---GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEG-VLV 950
Query: 664 EAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGR---LTDSQGRTVDFRNTLIIMTSNL 720
EA+RR Y +VL DE+ A +DV L ++LDD R + ++Q V N + T N
Sbjct: 951 EALRRG-YWIVL-DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNP 1008
Query: 721 GAEY 724
Y
Sbjct: 1009 PGGY 1012
Score = 34.7 bits (79), Expect = 0.12
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 25/125 (20%)
Query: 579 SVSNALRRFRA-GLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY 637
+ N R RA + P + G GVGKT L+ +LAR +IRI++SE
Sbjct: 1529 TTVNLRRVLRAMQVGKP------ILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQ 1579
Query: 638 MEKHSVSRLIGSPPGYVGYEEGG-------ALTEAVRRHPYQVVLFDEIEKAHSDVHNIL 690
+ + L GS + EEGG A+R + VL DEI A V L
Sbjct: 1580 TD---LCDLFGS---DLPVEEGGEFRWMDAPFLHAMRDGGW--VLLDEINLASQSVLEGL 1631
Query: 691 LQVLD 695
LD
Sbjct: 1632 NACLD 1636
Score = 33.1 bits (75), Expect = 0.30
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 189 RAIQVLSRRTKNNPVLI-GDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA 247
RA+QV P+L+ G PGVGKT++I LA + I +L + + G+ +
Sbjct: 1538 RAMQVG------KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLP 1591
Query: 248 GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHV 282
+ GEF L +R DG +L +DE+++
Sbjct: 1592 VEE-GGEFRWMDAPFLHAMR--DGGWVL-LDEINL 1622
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 45.8 bits (108), Expect = 6e-05
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS-VSRLIGSPPGYVGYEE 658
+ GPT GKT ++K LAR +++RI+ E+ + + + G + + E
Sbjct: 442 PILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFRE 498
Query: 659 GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGR 698
G + R+ +VL DE+ A DV L ++LDD R
Sbjct: 499 GVLVQAL--RNGDWIVL-DELNLAPHDVLEALNRLLDDNR 535
>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 44.2 bits (104), Expect = 1e-04
Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 48/269 (17%)
Query: 562 IETEISKSVIGQSAAVESVSNALRRF-RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLAR 620
+++E +IG+S +++ + ++ + +GL + +G TG GK + +
Sbjct: 72 LKSEALDDLIGESPSLQELREQIKAYAPSGL--------PVLIIGETGTGKELFARLIHA 123
Query: 621 LLFDDENS-MIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQV------ 673
L + I + + Y E + L G E GA T A
Sbjct: 124 LSARRAEAPFIAFNCAAYSENLQEAELFG--------HEKGAFTGAQGGKAGLFEQANGG 175
Query: 674 -VLFDEIEKAHSDVHNILLQVLDDG---RLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDG 729
+ DEI + + LL+VL++G R+ SQ R VD R LI T+ E ++
Sbjct: 176 TLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR--LICATTEDLEEAVLAGA 233
Query: 730 DSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMD 789
D + + P R ++I+L + + A+ +LG LS
Sbjct: 234 DLTRRLNILTITL---PPLRERKEDILLLAEHFLKSEAR----RLGLPLS---------V 277
Query: 790 FDDQVIDWLSCRGYDPSYGARPLKRVIQR 818
+ + L YD R LK +++R
Sbjct: 278 DSPEALRAL--LAYDWPGNIRELKNLVER 304
>gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 44.0 bits (104), Expect = 2e-04
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 561 RIETEISKSVIGQSAAVESVSNALR-RFR-----AGLQDPQRPMGSFMFLGPTGVGKTEL 614
I +E+ + +IGQ A ++V+ ALR R+R L+D P M +GPTGVGKTE+
Sbjct: 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILM-IGPTGVGKTEI 66
Query: 615 VKSLARLLFDDENSMIRIDMSEYMEKHSVSR 645
+ LA+L I+++ +++ E V R
Sbjct: 67 ARRLAKLA---GAPFIKVEATKFTEVGYVGR 94
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 43.7 bits (103), Expect = 2e-04
Identities = 63/222 (28%), Positives = 94/222 (42%), Gaps = 43/222 (19%)
Query: 168 LTEEARNGKLDPVIGR------DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLAS 221
L E R LD V+G+ +RRA++ ++ +L G PG GKT + +
Sbjct: 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTL-----A 65
Query: 222 RIINGDIPESLKGKRLMALDMGALIAGAK-FRGEFEERLKSLLCEIRSEDGEIILFIDEL 280
R+I G AL A+ +G K R EE K+ L R+ ILF+DE+
Sbjct: 66 RLIAGTT-----NAAFEALS--AVTSGVKDLREIIEEARKNRLLGRRT-----ILFLDEI 113
Query: 281 HVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGE 340
H K + L P + G + IGATT + E +PAL R + + +
Sbjct: 114 HRF---NKAQ-----QDALLPHVENGTIILIGATTEN---PSFELNPALLSRAR-VFELK 161
Query: 341 PTVTDTISIL--RGL--KERYEQHHKVRISDSALVSAAVLSN 378
P ++ I L R L +ER + + + AL LSN
Sbjct: 162 PLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN 203
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 43.4 bits (102), Expect = 2e-04
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLK 260
+L G PG GKT ++ +A+ G L ++ LI+ KF GE E L+
Sbjct: 220 GLLLYGPPGTGKTFLVRAVANE----------YGAFLFLINGPELIS--KFPGETESNLR 267
Query: 261 SLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASN--------LLKPSLARGELHCIG 312
E I+FIDEL L K +GA D + LL ++ +
Sbjct: 268 KAFAEALKFQVPSIIFIDELDAL--CPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLA 325
Query: 313 ATTLDEYRKYIEKDPALAR-RF-QSLLVGEPTVTDTISILRGLKERYE 358
AT + DPAL R RF + + +G P + ILR L ++
Sbjct: 326 AT-----NRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN 368
>gnl|CDD|145814 pfam02861, Clp_N, Clp amino terminal domain. This short domain is
found in one or two copies at the amino terminus of ClpA
and ClpB proteins from bacteria and eukaryotes. The
function of these domains is uncertain but they may form
a protein binding site.
Length = 53
Score = 42.9 bits (102), Expect = 4e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 94 SEEIAKKSGDSFVTAEKFLLAMVMETGGIGES-LKKCGLKFSRLEESIKKLRK 145
++E+AK+ G ++ E LLA++ E GI LKK G+ L E+I+KL
Sbjct: 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLLG 53
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 17 AQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKD 62
AQ A GHQ + EH+L LE++ G L++ +G D+ L++
Sbjct: 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALRE 46
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 40.7 bits (95), Expect = 0.002
Identities = 63/311 (20%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 523 AEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSN 582
A D +++ D + IV R + + K + ++G+S A++ +
Sbjct: 99 AFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGG---ELVGESPAMQQLRR 155
Query: 583 ALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS 642
+ + A + G +G GK + +++ + + I ++ + E
Sbjct: 156 LIAKV-APSDAS------VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208
Query: 643 VSRLIGSPPGYVGYEEGGALTEAVRRHPYQV------VLF-DEIEKAHSDVHNILLQVLD 695
S L G E GA T A+ R + LF DEI + ++ LL+VL
Sbjct: 209 ESELFG--------HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQ 260
Query: 696 DG---RLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRL 752
+ R+ ++ VD R II +N E + G F+ + RL
Sbjct: 261 EREFERVGGNKPIKVDVR---IIAATNRDLEEEVAAGR-------------FREDLYYRL 304
Query: 753 DEIILFE---KLRKEDMAKIVRIQLGRVLSLIKERNISM-DFDDQVIDWLSCRGYDPSYG 808
+ + L + RKED+ + L R E F + + L YD
Sbjct: 305 NVVPLRLPPLRERKEDIPLLAEHFLKRF---AAELGRPPKGFSPEALAAL--LAYDWPGN 359
Query: 809 ARPLKRVIQRY 819
R L+ V++R
Sbjct: 360 VRELENVVERA 370
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 38.6 bits (90), Expect = 0.007
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 21/103 (20%)
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRI------DMSEYMEKHSVSRLIGSPPGYVGY 656
+GP GVGKT L KS+A+ L +RI D +E + H + IG+ PG +
Sbjct: 355 LVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRDEAE-IRGHRRT-YIGAMPGKIIQ 409
Query: 657 EEGGALTEAVRRHPYQVVLFDEIEKAHSDVH----NILLQVLD 695
+ +A ++P V L DEI+K S + LL+VLD
Sbjct: 410 ----GMKKAGVKNP--VFLLDEIDKMGSSFRGDPASALLEVLD 446
>gnl|CDD|36207 KOG0989, KOG0989, KOG0989, Replication factor C, subunit RFC4
[Replication, recombination and repair].
Length = 346
Score = 38.0 bits (88), Expect = 0.012
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSM 629
+ GQ V+ + NAL R R + ++F GP G GKT + AR L ++
Sbjct: 38 LAGQEHVVQVLKNALLR---------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFP 88
Query: 630 IRIDMSEYMEKHSVSRLIGSPPGYV-GYEEGGALTEAVRRHP---YQVVLFDEIEKAHSD 685
R+ S R I + + + L + +P +++++ DE + SD
Sbjct: 89 CRV----LELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD 144
Query: 686 VHNILLQVLDD 696
L + ++D
Sbjct: 145 AQAALRRTMED 155
Score = 29.1 bits (65), Expect = 5.1
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 143 LRKGRVADSVNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP 202
L+ GR ++ + D R TE+ R D + G++ ++ L RR +
Sbjct: 1 LKSGRGSNQKREGEESDKSVPKHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHY 60
Query: 203 VLIGDPGVGKTAIIEGLASRI 223
+ G PG GKT+ A +
Sbjct: 61 LFYGPPGTGKTSTALAFARAL 81
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 36.2 bits (83), Expect = 0.036
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 31/155 (20%)
Query: 168 LTEEARNGKLDPVIGRDD------EMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLAS 221
L E R LD +G+ +R I+ + + +L G PG GKT + +AS
Sbjct: 128 LAERMRPKTLDDYVGQSHLVGQDGLLRSLIE---QNRIPSMILWGPPGTGKTTLARLIAS 184
Query: 222 RIINGDIPESLKGKRLMALDMGALIAGAK-FRGEFEERLKSLLCEIRSEDGEIILFIDEL 280
+ K +++ A A R FE+ R + ILFIDE+
Sbjct: 185 ---------TSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKR----KTILFIDEI 231
Query: 281 HVLVGAGKTDGAMDASNLLKPSLARGELHCIGATT 315
H + + + P + G++ IGATT
Sbjct: 232 HRFNKSQQ--------DTFLPHVENGDITLIGATT 258
>gnl|CDD|35959 KOG0740, KOG0740, KOG0740, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 428
Score = 36.1 bits (83), Expect = 0.038
Identities = 65/261 (24%), Positives = 98/261 (37%), Gaps = 43/261 (16%)
Query: 204 LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLL 263
L G PG GKT + + +A+ ES G + +L +K+ GE E+ +++L
Sbjct: 191 LFGPPGTGKTMLAKAIAT--------ES--GATFFNISASSLT--SKYVGESEKLVRALF 238
Query: 264 CEIRSEDGEIILFIDELHVLVGAGKTDGAMDASN----------LLKPSLARGELHCIGA 313
RS +I FIDE+ L+ ++D ++S K S + IGA
Sbjct: 239 KVARSLQPSVI-FIDEIDSLLSK-RSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296
Query: 314 TTLDEYRKYIEKDPALARRFQS-LLVGEPTVTDTISILRGLKERYEQHHKVRISD-SALV 371
T E D A RRF L + P + + L + EQ + + D S L
Sbjct: 297 TNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLK--EQPNGLSDLDISLLA 349
Query: 372 SAAVLSNRYITDRFLPDKAIDLMDEASA--RVRMQIDTKPEVLDELDRRIICLKIEKEAL 429
+T+ + L EA+ + T E +D R I K A
Sbjct: 350 K--------VTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAF 401
Query: 430 KKEKDSFSKGRLIELEKELSS 450
K K S S L + EK
Sbjct: 402 KNIKPSVSLEGLEKYEKWDKE 422
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 35.9 bits (82), Expect = 0.042
Identities = 48/224 (21%), Positives = 75/224 (33%), Gaps = 46/224 (20%)
Query: 578 ESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY 637
E++ L+R + RP + GP G GKT L K++A + I + SE
Sbjct: 256 EAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSEL 312
Query: 638 MEKHSVSRLIGSPPGYVGYEEGG--ALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLD 695
+ K +VG E L E R+ ++ DEI+ L
Sbjct: 313 LSK------------WVGESEKNIRELFEKARKLAPSIIFIDEIDS------------LA 348
Query: 696 DGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIV--RSAFKPEFL--NR 751
GR G L+ IE + V V+ P L R
Sbjct: 349 SGRGPSEDGSGRRVVGQLLTELDG------IEKAEGVL--VIAATNRPDDLDPALLRPGR 400
Query: 752 LDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795
D +I E+ +I +I L K+ ++ D D + +
Sbjct: 401 FDRLIYVPLPDLEERLEIFKIHLRD-----KKPPLAEDVDLEEL 439
Score = 29.8 bits (66), Expect = 3.3
Identities = 56/242 (23%), Positives = 87/242 (35%), Gaps = 46/242 (19%)
Query: 204 LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLL 263
L G PG GKT + + +A R +++ L+ +K+ GE E+ ++ L
Sbjct: 281 LYGPPGTGKTLLAKAVALES----------RSRFISVKGSELL--SKWVGESEKNIRELF 328
Query: 264 CEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA-------RGELHCIGATTL 316
+ R II FIDE+ L ++ L + I AT
Sbjct: 329 EKARKLAPSII-FIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387
Query: 317 DEYRKYIEKDPALAR--RFQSLL-VGEPTVTDTISILRGLKERYEQHHKVRISDSALVSA 373
+ + DPAL R RF L+ V P + + + I + + + L
Sbjct: 388 PD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELA-- 440
Query: 374 AVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEK 433
IT+ + L+ EA E L E RR + L +ALKK K
Sbjct: 441 ------EITEGYSGADIAALVREA----------ALEALREARRREVTLDDFLDALKKIK 484
Query: 434 DS 435
S
Sbjct: 485 PS 486
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
PIM1/LON [Posttranslational modification, protein
turnover, chaperones].
Length = 906
Score = 35.3 bits (81), Expect = 0.063
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGAL 662
F+GP GVGKT + KS+AR L R + + V+ + G YVG G +
Sbjct: 443 FVGPPGVGKTSIAKSIARAL---NRKFFRFSVGGMTD---VAEIKGHRRTYVG-AMPGKI 495
Query: 663 TEAVRRHPYQ--VVLFDEIEKAHSDVH----NILLQVLD 695
+ +++ + ++L DE++K S + LL++LD
Sbjct: 496 IQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLD 534
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 35.0 bits (80), Expect = 0.082
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 167 DLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING 226
T E + + P I + A V N VL+G PGVGKT + + + ++
Sbjct: 73 KKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK- 131
Query: 227 DIPESLKGKRLMALDMGAL---IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDEL 280
G ++ + L + A G EE+L L ++ +L ID++
Sbjct: 132 ------AGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVD------LLIIDDI 176
Score = 35.0 bits (80), Expect = 0.099
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 24/141 (17%)
Query: 582 NALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641
AL + ++ +R + + LGP GVGKT L ++ L S++ I + + K
Sbjct: 90 KALEDLASLVEFFERGE-NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148
Query: 642 SVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI--EKAHSDVHNILLQVLDDGRL 699
+ G L +++ +++ D+I E + ++L Q++
Sbjct: 149 KAAFDEG--------RLEEKLLRELKK--VDLLIIDDIGYEPFSQEEADLLFQLISRRYE 198
Query: 700 TDSQGRTVDFRNTLIIMTSNL 720
+ S +I+TSNL
Sbjct: 199 SRS-----------LIITSNL 208
>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
[Replication, recombination and repair].
Length = 333
Score = 34.9 bits (80), Expect = 0.095
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 163 KYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASR 222
KY E+ R L ++G +D + R + N ++ G PG GKT I LA
Sbjct: 12 KYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE 71
Query: 223 IINGDIPESL 232
++ E++
Sbjct: 72 LLGDSYKEAV 81
Score = 28.8 bits (64), Expect = 6.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDEN 627
+ M + + GP G GKT + LAR L D
Sbjct: 45 EGNMPNLIISGPPGTGKTTSILCLARELLGDSY 77
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 34.6 bits (79), Expect = 0.10
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 28/161 (17%)
Query: 203 VLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSL 262
+L G PG GKT + + +A+ I S+KG L+ K+ GE E ++ +
Sbjct: 549 LLCGPPGCGKTLLAKAVANEAGANFI--SVKGPELL----------NKYVGESERAVRQV 596
Query: 263 LCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSL-------ARGELHCIGATT 315
R+ +I F DE+ LV +G+ +S ++ L R ++ I AT
Sbjct: 597 FQRARASAPCVIFF-DEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATN 655
Query: 316 LDEYRKYIEKDPALAR--RF-QSLLVGEPTVTDTISILRGL 353
R I DPA+ R R + L VG P + ++IL+ +
Sbjct: 656 ----RPDI-IDPAILRPGRLDKLLYVGLPNAEERVAILKTI 691
>gnl|CDD|73174 COG0470, HolB, ATPase involved in DNA replication [DNA replication,
recombination, and repair].
Length = 325
Score = 34.5 bits (78), Expect = 0.13
Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 38/194 (19%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDE----------NSMIRIDMSEYMEKHSVSRLIGSPP 651
+F GP GVGKT +LA+ L + S I + + ++
Sbjct: 28 LFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP-SDLRK 86
Query: 652 GYVGYEEGGALTEAV----RRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTV 707
+ E+ L E + Y+VV+ DE +K D N LL+ L++
Sbjct: 87 IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP--------- 137
Query: 708 DFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMA 767
+NT I+ +N K++ +RS + + L + +
Sbjct: 138 --KNTRFILITND------------PSKILPTIRSRCQRIRFKPPSRLEAIAWLEDQGLE 183
Query: 768 KIVRIQLGRVLSLI 781
+I + G I
Sbjct: 184 EIAAVAEGDARKAI 197
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 34.4 bits (79), Expect = 0.13
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 562 IETEISKSVIGQSAAVESVS----NALRRFRAGLQDPQRPMG--SFMFLGPTGVGKTELV 615
I+ + + VIGQ A + +S N +R + + + + +GPTG GKT L
Sbjct: 55 IKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLA 114
Query: 616 KSLARLL 622
++LA++L
Sbjct: 115 QTLAKIL 121
Score = 29.0 bits (65), Expect = 5.2
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 746 PEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVL----SLIKERNISMDFDDQVIDWLSCR 801
PEF+ RL I E+L ++ + +I+ ++ L + + ++F ++ + ++ +
Sbjct: 286 PEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKK 345
Query: 802 GYDPSYGARPLKRVIQR 818
+ GAR L+ +I+
Sbjct: 346 AIERKTGARGLRSIIEE 362
>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 33.9 bits (79), Expect = 0.18
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 46/179 (25%)
Query: 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFD----D 625
+IG+S A++ V +R D + + G +G GK EL AR +
Sbjct: 1 LIGESPAMQEVLELAKR--VAPTD-----ATVLITGESGTGK-ELF---ARAIHQLSPRA 49
Query: 626 ENSMIRIDMSEYMEKHSVSRLIGSPPGYV-----GYEEGGALTEAVRRHPYQV------V 674
+ + ++ + P + G+E+ GA T AV
Sbjct: 50 DGPFVAVNCAAI------------PEELLESELFGHEK-GAFTGAVSDRKGLFELADGGT 96
Query: 675 LF-DEIEKAHSDVHNILLQVLDDG---RLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDG 729
LF DEI + ++ LL+VL +G R+ ++ VD R II +N E + +G
Sbjct: 97 LFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVR---IIAATNRDLEEAVAEG 152
Score = 33.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 20/69 (28%)
Query: 180 VIGRDDEMRRAIQVLSRRTKNN-PVLI-GDPGVGKTAIIEGLASRI-------------I 224
+IG M+ +++ R + VLI G+ G GK E A I +
Sbjct: 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGK----ELFARAIHQLSPRADGPFVAV 56
Query: 225 N-GDIPESL 232
N IPE L
Sbjct: 57 NCAAIPEEL 65
>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 33.8 bits (77), Expect = 0.19
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEY 637
RP G + GPTG GKT + + L E ++I I D EY
Sbjct: 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298
>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 491
Score = 33.8 bits (77), Expect = 0.22
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 33/154 (21%)
Query: 166 RDLTEEARNGKLDPVIGRDDEMRRAIQVLS----------------RRTKNNPVLIGDPG 209
RD+ + N K D + G + A ++L RR +++G PG
Sbjct: 200 RDILQRNPNIKWDDIAG----LHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPG 255
Query: 210 VGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSE 269
GKT + + +A+ ++ + +K+RGE E+L LL E+
Sbjct: 256 TGKTLLAKAVATEC------------GTTFFNVSSSTLTSKWRGE-SEKLVRLLFEMARF 302
Query: 270 DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSL 303
+FIDE+ L +AS +K L
Sbjct: 303 YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSEL 336
>gnl|CDD|33094 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism / Transcription].
Length = 606
Score = 33.3 bits (76), Expect = 0.26
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 604 LGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALT 663
G TG GK L +++ + + ++ + E S L G YV GA
Sbjct: 342 QGETGTGKEVLARAI-HQNSEAAGPFVAVNCAAIPEALIESELFG----YVAGAFTGARR 396
Query: 664 E----AVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT--DSQGRTVDFRNTLIIMT 717
+ + + + DEI + + LL+VL +G +T VD R +I
Sbjct: 397 KGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAA 453
Query: 718 SNLGAEYLIEDG 729
++ L+E G
Sbjct: 454 THRDLAQLVEQG 465
>gnl|CDD|133250 cd00154, Rab, Rab family. Rab GTPases form the largest family
within the Ras superfamily. There are at least 60 Rab
genes in the human genome, and a number of Rab GTPases
are conserved from yeast to humans. Rab GTPases are
small, monomeric proteins that function as molecular
switches to regulate vesicle trafficking pathways. The
different Rab GTPases are localized to the cytosolic
face of specific intracellular membranes, where they
regulate distinct steps in membrane traffic pathways. In
the GTP-bound form, Rab GTPases recruit specific sets of
effector proteins onto membranes. Through their
effectors, Rab GTPases regulate vesicle formation,
actin- and tubulin-dependent vesicle movement, and
membrane fusion. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular
organisms possess 5-20 Rab members, several have been
found to possess 60 or more Rabs; for many of these Rab
isoforms, homologous proteins are not found in other
organisms. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Since crystal structures often lack C-terminal
residues, the lipid modification site is not available
for annotation in many of the CDs in the hierarchy, but
is included where possible.
Length = 159
Score = 33.6 bits (78), Expect = 0.26
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 203 VLIGDPGVGKTAIIEGLASRIINGDIPESLK 233
VLIGD GVGKT+++ R ++G E+ K
Sbjct: 4 VLIGDSGVGKTSLL----LRFVDGKFDENYK 30
>gnl|CDD|33687 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 33.4 bits (76), Expect = 0.28
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 179 PVIGRDDEMRRAIQVLSRRTKNNPVLI---GDPGVGKTAIIEGLASRIINGD 227
P+ GR+ E+ + + R +K ++ G+ G+GK+A++ + I
Sbjct: 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR 52
>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
[Energy production and conversion].
Length = 680
Score = 33.0 bits (75), Expect = 0.31
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 267 RSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKD 326
++ DG +I F+ + AG TD + P+ ++ I L E + Y+ D
Sbjct: 327 KTSDGRVIFFLPWQGKTI-AGTTDIPTSVT--HSPTPTEDDIQFI----LKEVQHYLSFD 379
Query: 327 PALARR--------FQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSN 378
+ R + L+ V DT S++R H V +S S L++ A
Sbjct: 380 VEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRN--------HFVFVSPSGLITIA--GG 429
Query: 379 RYITDRFLPDKAIDL 393
++ T R + ++ +D
Sbjct: 430 KWTTYRHMAEETVDA 444
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 33.2 bits (76), Expect = 0.31
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 597 PMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME-KHSVSRLIGSPPGYVG 655
G + LGP G GKT L++ LA L + IRID + ++ + R IG P G
Sbjct: 24 GPGMYGLLGPNGAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIGYLPQEFG 82
Query: 656 YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTV 707
+ E + Y L +V + +VL+ L D + +
Sbjct: 83 VYPNFTVREFLD---YIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI 128
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 33.1 bits (75), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL 622
V+GQ V+++SNAL R +++F GP GVGKT + + LA+ L
Sbjct: 18 VVGQEHVVKTLSNALEN--------GRIAHAYLFSGPRGVGKTTIARILAKAL 62
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 33.0 bits (75), Expect = 0.36
Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 19/168 (11%)
Query: 475 LKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKA-DSTAEDMVQEVV-- 531
LK E R E A++ + E++ E + + + AE M E V
Sbjct: 80 LKDPAEKKREERKAAKKIERSTPSLI---------ERKTQEVKDSGEEIAEMMRDEKVPI 130
Query: 532 -TSDNIANIVSRWTGIPV-DKMLESDREKFLR--IETEISKSVIGQSAAVESVSNALRRF 587
+ I + + + LR +E EI + S LR+
Sbjct: 131 RELEEIPPEFVALYKQEIQSPTRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKL 190
Query: 588 RAGLQD--PQRPMGSFMFLGPTGVGK-TELVKSLARLLFDDENSMIRI 632
L + +GPTGVGK T L K AR + + + I
Sbjct: 191 LLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAI 238
>gnl|CDD|32560 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 33.0 bits (75), Expect = 0.37
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 414 ELDRRIICLKIEKEALKKEKDSFSKGRLIEL--EKELSSLEEKSHSLTLRWQEGQRKILY 471
EL R + LK E E L+ E + F + ++ ++E+ + + + L +E ++++
Sbjct: 440 ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV-- 497
Query: 472 VADLKKRLESMR 483
+L+++L +R
Sbjct: 498 -EELERKLAELR 508
>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
protein 2 (chromosome condensation complex Condensin,
subunit E) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1174
Score = 32.6 bits (74), Expect = 0.41
Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 12/197 (6%)
Query: 390 AIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKEL- 448
+ + E QI K L + + +I L E K+ + + RL +LEKE+
Sbjct: 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTL----EKKMKDAKANRERRLKDLEKEIK 797
Query: 449 ---SSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNEL-AIAQRQGHFERAGELAYG 504
EE S L R E +R L +L+K + S++ +L + ++ +
Sbjct: 798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857
Query: 505 LIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRW-TGIPVDKMLESDREKFLRIE 563
+ K EK++ +A+ + +++ I+ +++ + E +R+K
Sbjct: 858 KVDKVEKDVKKAQAELKDQKAKQRDI--DTEISGLLTSQEKCLSEKSDGELERKKLEHEV 915
Query: 564 TEISKSVIGQSAAVESV 580
T++ VE +
Sbjct: 916 TKLESEKANARKEVEKL 932
Score = 28.4 bits (63), Expect = 8.9
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 440 RLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAG 499
L LE+EL SLE +S Q+ + K+ +A L+KRLE + + E
Sbjct: 692 ELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVE 751
Query: 500 ELAYGLIPKTEKELDEAEKADSTAEDMVQE 529
E I + E+ L + E ST E +++
Sbjct: 752 ESEQQ-IKEKERALKKCEDKISTLEKKMKD 780
>gnl|CDD|36189 KOG0971, KOG0971, KOG0971, Microtubule-associated protein dynactin
DCTN1/Glued [Cell cycle control, cell division,
chromosome partitioning, Cytoskeleton].
Length = 1243
Score = 32.3 bits (73), Expect = 0.50
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 21/216 (9%)
Query: 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399
TD+ S L++ EQ S L++ A+ Y +R P K L A+A
Sbjct: 888 RIYETDSSSPYECLRQSLEQL----NSTLNLLATAMQEGEYDAERP-PSKPPPLELRAAA 942
Query: 400 RVRMQIDTKPEVLDELDRRIICLKIEKEA-LKKEKDSFSKGRLIELEKELSSLEEKSHSL 458
D + L DR +++K A +K+E+ S ++ RL EK+LSS + +
Sbjct: 943 LKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHR 1002
Query: 459 TLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEK 518
+ QE +LE + + +++ FE + I + E E E ++
Sbjct: 1003 VEKVQE-------------KLEET--QALLRKKEKEFEETMDALQADIDQLESEKAELKQ 1047
Query: 519 ADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLES 554
++ QE + I + +GI ++ S
Sbjct: 1048 RLNSQSKKTQEGSRGPPPSGISTLVSGIASEEQQRS 1083
>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
the AAA+-type ATPase domain [Posttranslational
modification, protein turnover, chaperones].
Length = 953
Score = 32.3 bits (73), Expect = 0.53
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFE 256
R ++ +L G PG GKT + + +A+ + S+KG L L+M + G+ E
Sbjct: 703 RKRSGILLYGPPGTGKTLLAKAVATECSLNFL--SVKGPEL--LNM--------YVGQSE 750
Query: 257 ERLKSLLCEIRSEDGEIILFIDELHVLV----GAGKTDGAMD--ASNLLKP--SLARG-- 306
E ++ + RS ++F DEL L +G + G MD S LL L+
Sbjct: 751 ENVREVFERARSA-APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809
Query: 307 -ELHCIGATTLDEYRKYIEKDPALAR--RFQSLL-VGEP-TVTDTISILRGLKERY 357
++ IGAT + DPAL R RF L+ VG + +L L ++
Sbjct: 810 QDVFVIGATNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF 860
>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 32.3 bits (73), Expect = 0.57
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR-LIGSPPGYVGYE--- 657
+ +GP VGKT L++ +ARLL D N + + E+ ++ L G P G
Sbjct: 141 LIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDV 200
Query: 658 -----EGGALTEAVRRHPYQVVLFDEI 679
+ + A+R +V++ DEI
Sbjct: 201 LDPCPKAEGMMMAIRSMSPEVIIVDEI 227
Score = 31.9 bits (72), Expect = 0.88
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 191 IQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGA 249
I+ L + N ++IG P VGKT ++ +A R+++ I + L K++ +D + IAG
Sbjct: 129 IKDLYQNGWLNTLIIGPPQVGKTTLLRDIA-RLLSDGINQFL-PKKVGIIDERSEIAGC 185
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 32.2 bits (73), Expect = 0.60
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGY 656
+ +GP G GK+ L+K L LL + +D + + S+ L VG
Sbjct: 34 LLIGPNGSGKSTLLKLLNGLLKPTSGE-VLVDGLDTSSEKSLLEL----RQKVGL 83
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 32.3 bits (74), Expect = 0.62
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGY 656
LGP G GKT L+K + LL D + + E V R IG P
Sbjct: 31 LLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSL 84
>gnl|CDD|133293 cd01893, Miro1, Miro1 subfamily. Miro (mitochondrial Rho) proteins
have tandem GTP-binding domains separated by a linker
region containing putative calcium-binding EF hand
motifs. Genes encoding Miro-like proteins were found in
several eukaryotic organisms. This CD represents the
N-terminal GTPase domain of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however, Miro
is one of few Rho subfamilies that lack this feature.
Length = 166
Score = 31.5 bits (72), Expect = 0.91
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 203 VLIGDPGVGKTAIIEGLAS 221
VLIGD GVGK+++I L S
Sbjct: 4 VLIGDEGVGKSSLIMSLVS 22
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 31.5 bits (71), Expect = 0.93
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 602 MFLGPTGVGKTELVKSLARLL 622
+ LGPTG GKT L ++LAR+L
Sbjct: 230 LLLGPTGSGKTLLAQTLARVL 250
>gnl|CDD|36919 KOG1707, KOG1707, KOG1707, Predicted Ras related/Rac-GTP binding
protein [Defense mechanisms].
Length = 625
Score = 31.5 bits (71), Expect = 0.96
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESL 232
DDE + +++ VLIGD GVGKT++I L +P L
Sbjct: 3 DDETLKDVRI---------VLIGDEGVGKTSLIMSLLEEEFVDAVPRRL 42
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 31.3 bits (71), Expect = 1.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS---PPGYVGY 656
FLGP G GKT +K + L+ D I D Y + R IG+ PG+
Sbjct: 31 FLGPNGAGKTTTMKIILGLIKPDSGE-ITFDGKSYQKNIEALRRIGALIEAPGFYPN 86
>gnl|CDD|35832 KOG0612, KOG0612, KOG0612, Rho-associated, coiled-coil containing
protein kinase [Signal transduction mechanisms].
Length = 1317
Score = 31.1 bits (70), Expect = 1.2
Identities = 21/131 (16%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 396 EASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSF--SKGRLIELEKELSSLEE 453
E S +++ +++ ++ D+L + KK + + + E+ + ++ L+E
Sbjct: 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630
Query: 454 KSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKEL 513
+ SL + G++++L V +LK+ + ++ + ER ++ + + E
Sbjct: 631 EISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEH 690
Query: 514 DEAEKADSTAE 524
D A+
Sbjct: 691 HRLRLQDKEAQ 701
>gnl|CDD|32733 COG2909, MalT, ATP-dependent transcriptional regulator
[Transcription].
Length = 894
Score = 31.0 bits (70), Expect = 1.2
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDENSM-IRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG 660
+ P G GKT L+ L D + +D S+ +S LI +
Sbjct: 41 LISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100
Query: 661 ALTEAVRRHPYQVV-LFDEIEKAHSDVHNILLQVLDD 696
A T + + L + + L VLDD
Sbjct: 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDD 137
>gnl|CDD|176125 cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type
transcriptional regulator GltC, which activates gltA
expression of glutamate synthase operon, contains type 2
periplasmic binding fold. GltC, a member of the LysR
family of bacterial transcriptional factors, activates
the expression of gltA gene of glutamate synthase operon
and is essential for cell growth in the absence of
glutamate. Glutamate synthase is a heterodimeric protein
that encoded by gltA and gltB, whose expression is
subject to nutritional regulation. GltC also negatively
auto-regulates its own expression. This
substrate-binding domain has strong homology to the type
2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 195
Score = 31.4 bits (72), Expect = 1.3
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 27 QNLVPEHVLHIFLEDEQGAVYSLIQCSGGDI-AQLKD--YNQTVLSKIPKVTGGGAQVYL 83
+LVP+ ++ F ++ + L Q S ++ LK+ + + S +P
Sbjct: 12 TSLVPD-LIRAFRKEYPNVTFELHQGSTDELLDDLKNGELDLALCSPVPDEPDIEWIPLF 70
Query: 84 SQPLAVILSKSEEIAKKS--------GDSFVT 107
++ L +++ K +A + + FV
Sbjct: 71 TEELVLVVPKDHPLAGRDSVDLAELADEPFVL 102
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 31.0 bits (70), Expect = 1.3
Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 562 IETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGS-FMFLGPTGVGKTELVKSLAR 620
IE E G AV VS +RR G F LGP G GKT +K L
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRR------------GEIFGLLGPNGAGKTTTIKMLTT 48
Query: 621 LLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG 659
LL E V R IG + ++
Sbjct: 49 LLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 31.1 bits (71), Expect = 1.3
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 188 RRAIQVLSR----RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKR---LMAL 240
RR I L+ N +L+G PGVGKT + L + G
Sbjct: 32 RRLIAELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQACR-------AGYSVLFTRTP 84
Query: 241 DMGALIAGAKFRGEFEERLKSLL 263
D+ + A+ G L+ L
Sbjct: 85 DLVEQLKRARGDGRLARTLQRLA 107
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 30.9 bits (70), Expect = 1.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRIDMS 635
LGP G+GKT VK LA ++ DE S + +S
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS 404
>gnl|CDD|35946 KOG0727, KOG0727, KOG0727, 26S proteasome regulatory complex,
ATPase RPT3 [Posttranslational modification, protein
turnover, chaperones].
Length = 408
Score = 31.1 bits (70), Expect = 1.4
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 593 DPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641
DP P G ++ GP G GKT L K++A + IR+ SE+++K+
Sbjct: 187 DP--PRGVLLY-GPPGTGKTMLAKAVAN---HTTAAFIRVVGSEFVQKY 229
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 30.9 bits (70), Expect = 1.5
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 604 LGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS--VSRLIGSPPGYVGYEEGGA 661
LGP G GK+ L+K LA LL + +D + +++ + P G
Sbjct: 34 LGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92
Query: 662 LTEAVR--RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVD 708
+ E V R+P+ + ++ V + L+ L R VD
Sbjct: 93 VYELVLLGRYPHLGLFGRPSKEDEEIVE----EALELLGLEHLADRPVD 137
>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 30.7 bits (69), Expect = 1.5
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 178 DPVIGRDDEMRRAIQVLSRRTKN----NPVLIGDPGVGKTAIIEGLASRIIN 225
+ + R++E+ + L+ + N ++ G G GKTA ++ + +
Sbjct: 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 30.7 bits (69), Expect = 1.6
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG 648
F LGP G GKT L+K LA LL ++ + E V R IG
Sbjct: 34 FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 30.6 bits (69), Expect = 1.7
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 404 QIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELE-------KELSSLEEKSH 456
++ E L+EL+ + L++EK A + K + + L+ KE LEE+
Sbjct: 937 EVQELKEQLEELELTLQKLELEKNAAEN-KLKNLEEEINSLDENISKLSKEKKELEERIR 995
Query: 457 SLTLRWQEGQRKILYVADLKKRLESMRNEL 486
L Q + K + K +LE ++L
Sbjct: 996 ELQDDLQAEEEKAKSLNKAKAKLEQQLDDL 1025
Score = 29.4 bits (66), Expect = 3.7
Identities = 39/188 (20%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 351 RGLKERYEQHHKVRISDSALVSAAVLSNRYITD-----RFLPDKAIDLMDEASARVRMQI 405
R E K+ + L +N+ D + L + +L E R +
Sbjct: 1597 RSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRARE 1656
Query: 406 DTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRL---IELEKELSSLEEKSHSLTLRW 462
+ E L E +RR+ L+ E E L+++ ++ + R +ELE+ + E + +
Sbjct: 1657 ELL-EQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLT 1715
Query: 463 QEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADST 522
E ++ +A L+ LE ++EL A+ + ++A A L + KE + ++K +
Sbjct: 1716 AEKRKLEAEIAQLQSELEEEQSELRAAEERA--KKAQADAAKLAEELRKEQETSQKLERL 1773
Query: 523 AEDMVQEV 530
+ + ++V
Sbjct: 1774 KKSLERQV 1781
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 30.7 bits (69), Expect = 1.7
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 525 DMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEIS-KSVIGQSAAVESVSNA 583
D +V+ + T I V LE+ RE+ I ++I+ VIGQ A
Sbjct: 80 DYAFKVIRVVPSGGGIITSTTIFV---LETPREEDREIISDITLDDVIGQEEAKRKCRLI 136
Query: 584 LRRFRAGLQDPQR----PMGSFMFLGPTGVGKTELVKSLA 619
+ L++P+R + +F GP G GKT + K+LA
Sbjct: 137 MEY----LENPERFGDWAPKNVLFYGPPGTGKTMMAKALA 172
Score = 30.3 bits (68), Expect = 2.3
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 24/126 (19%)
Query: 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKN----------NPVLIGDPGVGKTAIIE 217
E + LD VIG++ E +R +++ +N N + G PG GKT + +
Sbjct: 111 DREIISDITLDDVIGQE-EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAK 169
Query: 218 GLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFI 277
LA+ +P L+ + LI + G+ R+ L E + I+FI
Sbjct: 170 ALANEA---KVP-------LLLVKATELI--GEHVGDGARRIHELY-ERARKAAPCIVFI 216
Query: 278 DELHVL 283
DEL +
Sbjct: 217 DELDAI 222
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 30.6 bits (69), Expect = 1.8
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 29/126 (23%)
Query: 548 VDKMLESDREKFLRIE---TEISKSVIGQSAAVESVS----------NALRRFRAGLQDP 594
+K+LE RE+ R+E E+ S +G A V ++ R +
Sbjct: 67 NEKLLEKLRERIDRVELPTIEVRFSALGVEADVTYGPTLVNILSNPLESILRMLGKRKKK 126
Query: 595 QRPMGSFM-----------FLGPTGVGKTELVKSLARLL--FDDENSMIR---IDMSEYM 638
+ + + LGP G GKT L+K+LA L F + I D+ E++
Sbjct: 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFV 186
Query: 639 EKHSVS 644
K +V+
Sbjct: 187 PKKTVA 192
>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion..
Length = 165
Score = 30.5 bits (68), Expect = 1.8
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 203 VLIGDPGVGKTAIIEGLASRIINGD--------------IPESLKGKRLMALDMGALIAG 248
++ G G GKT + LA I + E L G+ L +I
Sbjct: 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVF 62
Query: 249 AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA 292
A RL S +R G+ ++ +DEL LV A +
Sbjct: 63 ATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIRE 106
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 30.8 bits (70), Expect = 1.9
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 561 RIETEISKSVIGQS-AAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGK 611
R + E + + A +E + L+ P+R P G + +GP G GK
Sbjct: 171 RFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKG-VLLVGPPGTGK 229
Query: 612 TELVKSLA 619
T L K++A
Sbjct: 230 TLLAKAIA 237
>gnl|CDD|34884 COG5293, COG5293, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 591
Score = 30.4 bits (68), Expect = 2.1
Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 36/172 (20%)
Query: 377 SNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSF 436
++ F PD+ L +E Q+ E + +R I +E+ +
Sbjct: 290 TSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAIT----------EERHDY 339
Query: 437 SKGRLIELEKELSSLEEKSHSLTLRWQEG--------------------QRKILYVADLK 476
+ + E+E +L + + L R EG +A+L+
Sbjct: 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELE 399
Query: 477 KRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQ 528
R+E +R + + G L + + E+ E ++ S + +
Sbjct: 400 YRIEPLR------KLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGR 445
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 30.3 bits (68), Expect = 2.1
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG 660
+GP G GK+ L++++A LL I ID + + + GYV GG
Sbjct: 28 VALVGPNGSGKSTLLRAIAGLLKPTSGE-ILIDGKDIAKLP--LEELRRRIGYVPQLSGG 84
Query: 661 -----ALTEAVRRHPYQVVLFDEI-----EKAHSDVHNILLQVLDDGR 698
AL A+ +P ++L DE + + +L ++ ++GR
Sbjct: 85 QRQRVALARALLLNP-DLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.4 bits (68), Expect = 2.4
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 413 DELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYV 472
+ R++ + E+ +E+ K +L ELE+ LS LEE SL L E
Sbjct: 574 LLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAE-------- 625
Query: 473 ADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEA-EKADSTAEDMVQEVV 531
+L++ E + +EL Q E + A + + +EL+ + E+ Q
Sbjct: 626 NELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEE 685
Query: 532 TSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISK 568
+ + + + + LE +K IE I +
Sbjct: 686 KLEELEQLEEELEQLREE--LEELLKKLGEIEQLIEE 720
>gnl|CDD|30727 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 30.2 bits (68), Expect = 2.4
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 591 LQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD------ENSMIRIDMSEYMEKHSVS 644
L + RPM GP G GKT L++ R L D+ + + ++ + K
Sbjct: 6 LAEKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGE 65
Query: 645 RLIGSPPGYVGYEE----GGALTEAVRRHPYQVVLFDE 678
+IG G + + A+ E V P +LF E
Sbjct: 66 PIIGVETGKGCHLDASMNLEAIEELVLDFPDLDLLFIE 103
>gnl|CDD|133307 cd04107, Rab32_Rab38, Rab38/Rab32 subfamily. Rab32 and Rab38 are
members of the Rab family of small GTPases. Human Rab32
was first identified in platelets but it is expressed in
a variety of cell types, where it functions as an
A-kinase anchoring protein (AKAP). Rab38 has been shown
to be melanocyte-specific. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 201
Score = 29.9 bits (68), Expect = 2.6
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 205 IGDPGVGKTAII 216
IGD GVGKT+II
Sbjct: 6 IGDLGVGKTSII 17
>gnl|CDD|143853 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 29.8 bits (68), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 203 VLIGDPGVGKTAIIEGLASRIINGDIPES 231
VL+GD GVGK++ L R PE
Sbjct: 3 VLVGDGGVGKSS----LLIRFTQNKFPEE 27
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 29.7 bits (67), Expect = 3.3
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 571 IGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI 630
IGQ E V L+ F + + + GP G+GKT +LA ++ ++ +
Sbjct: 29 IGQ----EKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKT----TLAHIIANELGVNL 80
Query: 631 RIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNIL 690
+I +EK PG + LT V+ DEI + V +L
Sbjct: 81 KITSGPALEK----------PG----DLAAILTNL---EEGDVLFIDEIHRLSPAVEEVL 123
Query: 691 LQVLDDGRL 699
++D RL
Sbjct: 124 YPAMEDFRL 132
>gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 386
Score = 29.5 bits (66), Expect = 3.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK 640
RP + GP G GKT L K++A+ + + I + +S K
Sbjct: 125 RPPKGILLYGPPGTGKTMLAKAIAK---EAGANFINVSVSNLTSK 166
>gnl|CDD|36208 KOG0990, KOG0990, KOG0990, Replication factor C, subunit RFC5
[Replication, recombination and repair].
Length = 360
Score = 29.6 bits (66), Expect = 3.7
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 162 KKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLAS 221
+Y + E+ R L VI ++ + + + G PG GKT+ I A
Sbjct: 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANAR 84
Query: 222 RI 223
Sbjct: 85 DF 86
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 29.6 bits (66), Expect = 3.8
Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 44/236 (18%)
Query: 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEE 658
G+ + GP G GKT LVK+L D + ++E S S L GS +
Sbjct: 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIA--------HVEIVSCSTLDGSSLEKIQKFL 483
Query: 659 GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS 718
+EA+ P +VL D A + + +G+ R F N +I +
Sbjct: 484 NNVFSEALWYAPSIIVLDDLDCLASASSNE-------NGQDGVVSERLAAFLNQVIKI-- 534
Query: 719 NLGAEYLIEDGDSVHDKVMGIVRS--AFKPEFLN--RLDEIILFEKLRKEDMAKIVRIQL 774
++ + V+ + P ++ +I +I+
Sbjct: 535 ------YLKRNRKI--AVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILT--- 583
Query: 775 GRVLSLIKERNISMDFDDQVIDWLS--CRGYDPSYGARPLKRVIQRYIQNPLAERV 828
++ + + DD +D+LS GY L ++R I ER+
Sbjct: 584 ----TIFSKNLSDITMDD--LDFLSVKTEGYLA----TDLVIFVERAIHEAFLERI 629
Score = 28.8 bits (64), Expect = 6.5
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 21/88 (23%)
Query: 197 RTKNNPVLIGDPGVGKTAIIEGLAS----RIINGDIPESLKGKRLMALDMGALIAGAKFR 252
R + +L G PG GKT + +AS R I S+KG L+ +K+
Sbjct: 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFI------SVKGPELL----------SKYI 742
Query: 253 GEFEERLKSLLCEIRSEDGEIILFIDEL 280
G E+ ++ L +S ILF DE
Sbjct: 743 GASEQNVRDLFERAQSA-KPCILFFDEF 769
>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
CHL12/CTF18 [Energy production and conversion,
Replication, recombination and repair].
Length = 877
Score = 29.6 bits (66), Expect = 3.8
Identities = 52/242 (21%), Positives = 82/242 (33%), Gaps = 39/242 (16%)
Query: 452 EEKSHSLTLRWQEGQRKILYV--ADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKT 509
E H +T G+ +L A L + S+R E R + Y +
Sbjct: 177 EGDGHIITFPDDGGETVLLKKKPAKLATGVISLRTEPDTVWRS-------DDLYSV--NE 227
Query: 510 EKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKM-------LESDREKFLRI 562
EAE + + + + ++ W VDK L SD + R+
Sbjct: 228 NSLEKEAEASVDDRTNEQETSPITGKTSSHDKLW----VDKYRPKKFTDLLSDEKTNRRM 283
Query: 563 ETEISK---SVIGQSAAVESVSNALR---RFRAGLQDPQRPMGSFMFL-GPTGVGKTELV 615
+ + V GQ + S L +RP + L GP G+GKT L
Sbjct: 284 LGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343
Query: 616 KSLAR--------LLFDDENS--MIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEA 665
+A+ + DE + M++ + ++ HSV P V E GA A
Sbjct: 344 HVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAA 403
Query: 666 VR 667
V
Sbjct: 404 VD 405
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 29.4 bits (66), Expect = 4.0
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 597 PMGSFM-FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYV 654
G +GP G GK+ L+K++ LL I+I ++ R+ GYV
Sbjct: 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGE-IKIFGKPVRKRRKRLRI-----GYV 80
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 29.6 bits (66), Expect = 4.1
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS-VSRLIGSPPGYVGY 656
S + G T GKT L+ +L + +E + D E H +L+
Sbjct: 143 RKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESGSS 202
Query: 657 EEG--GALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT 700
E L A+R+ P +++ E+ +L Q + G T
Sbjct: 203 EVSLEDLLRAALRQRPDYIIV-GEL---RGREAFVLFQAMQTGHGT 244
>gnl|CDD|133252 cd00876, Ras, Ras family. The Ras family of the Ras superfamily
includes classical N-Ras, H-Ras, and K-Ras, as well as
R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1,
RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins
regulate cell growth, proliferation and differentiation.
Ras is activated by guanine nucleotide exchange factors
(GEFs) that release GDP and allow GTP binding. Many
RasGEFs have been identified. These are sequestered in
the cytosol until activation by growth factors triggers
recruitment to the plasma membrane or Golgi, where the
GEF colocalizes with Ras. Active GTP-bound Ras
interacts with several effector proteins: among the best
characterized are the Raf kinases, phosphatidylinositol
3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras
proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Ras proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 160
Score = 29.4 bits (67), Expect = 4.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 203 VLIGDPGVGKTAII 216
V++G GVGK+AI
Sbjct: 3 VVLGAGGVGKSAIT 16
>gnl|CDD|31918 COG1732, OpuBC, Periplasmic glycine betaine/choline-binding
(lipo)protein of an ABC-type transport system
(osmoprotectant binding protein) [Cell envelope
biogenesis, outer membrane].
Length = 300
Score = 29.4 bits (66), Expect = 4.4
Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 27/150 (18%)
Query: 708 DFRNTL-IIMTSNLGAEYLIEDGDSVHD--KVMGIVRSAFKPEFLNRLDEIILFEKLRKE 764
F NT + + ++ +Y +E ++ D K ++ EF R D + +K
Sbjct: 133 GFNNTYALAVRKDVAEKYNLE---TISDLAKHSNQLKLGADSEFAERADGLPALQKAYGF 189
Query: 765 DMAKIVR-IQLGRVLSLIKERNISM-----------DFDDQVIDWLSCRGYDPSYGARPL 812
D +R + G +K + + +V+ +G+ P Y A P+
Sbjct: 190 DFKPDLRTMDGGLTYQALKNGTVDAADAYSTDGRIAAYGLKVLK--DDKGFFPPYQAAPV 247
Query: 813 --KRVIQRY-----IQNPLAERVLSQTISD 835
+ V++++ I N L+ ++ ++T+
Sbjct: 248 VREEVLKKHPELKTILNKLSGKIDTETMQA 277
>gnl|CDD|38758 KOG3550, KOG3550, KOG3550, Receptor targeting protein Lin-7
[Extracellular structures].
Length = 207
Score = 29.3 bits (65), Expect = 4.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 388 DKAIDLMDEASARVRMQIDTKPEVLDELDRR 418
+KA++L+ A V++ + P+VL+E++ R
Sbjct: 154 EKAVELLKAAVGSVKLVVRYTPKVLEEMEAR 184
>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 122
Score = 29.3 bits (66), Expect = 4.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 601 FMFLGPTGVGKTELVKSLARLL 622
+ +GP GKT L++ L L
Sbjct: 3 VLVVGPKDSGKTTLIRKLLNYL 24
>gnl|CDD|35958 KOG0739, KOG0739, KOG0739, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 439
Score = 29.2 bits (65), Expect = 4.7
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 203 VLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSL 262
+L G PG GK+ + + +A+ S+ L++ K+ GE E+L
Sbjct: 170 LLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLVS----------KWMGE-SEKLVKN 216
Query: 263 LCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSL 303
L E+ E+ I+FIDE+ L G+ ++ +AS +K
Sbjct: 217 LFEMARENKPSIIFIDEIDSLCGSR-SENESEASRRIKTEF 256
>gnl|CDD|145008 pfam01637, Arch_ATPase, Archaeal ATPase. This family contain a
conserved P-loop motif that is involved in binding ATP.
This family is almost exclusively found in
archaebacteria and particularly in Methanococcus
jannaschii that encodes sixteen members of this family.
Length = 223
Score = 29.2 bits (66), Expect = 5.0
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 19/123 (15%)
Query: 181 IGRDDEMRRAIQVLSRRTKNNPVLI-GDPGVGKTAIIEGLASRIINGDIP---------- 229
R+ E++ + R T +++ G GKTA++ +
Sbjct: 2 FDREKELKELEEWAERGT-YPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRRE 60
Query: 230 -----ESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEIRSEDGEIILFIDELHV 282
+ + + +A +G + L L ++ + +I + IDE+
Sbjct: 61 FEEKLDRFEEAKRLAEALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQY 120
Query: 283 LVG 285
+G
Sbjct: 121 AIG 123
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 29.1 bits (65), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 596 RPMGSFMFLGPTGVGKTELVKSLARL 621
RP + G +G GKT L+++LA L
Sbjct: 417 RPGERLLITGESGAGKTSLLRALAGL 442
>gnl|CDD|109812 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.9 bits (65), Expect = 5.2
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 440 RLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAG 499
ELE+ + +EE +E + L + + K+ E L ++ E
Sbjct: 6 EQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLL--EKKADELEEE- 62
Query: 500 ELAYGLIPKTEKELDEAEKADSTAEDMVQEV 530
+ +EA ++ E + EV
Sbjct: 63 ---------NRRLEEEAAASEEERERLEAEV 84
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 29.1 bits (65), Expect = 5.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 599 GSFM-FLGPTGVGKTELVKSLARLLFDDENSMIRID 633
G F+ LGP+G GK+ L++ +A L I ID
Sbjct: 29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE-ILID 63
>gnl|CDD|133251 cd00157, Rho, Rho (Ras homology) family. Members of the Rho family
include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop.
There are 22 human Rho family members identified
currently. These proteins are all involved in the
reorganization of the actin cytoskeleton in response to
external stimuli. They also have roles in cell
transformation by Ras in cytokinesis, in focal adhesion
formation and in the stimulation of stress-activated
kinase. These various functions are controlled through
distinct effector proteins and mediated through a
GTP-binding/GTPase cycle involving three classes of
regulating proteins: GAPs (GTPase-activating proteins),
GEFs (guanine nucleotide exchange factors), and GDIs
(guanine nucleotide dissociation inhibitors). Most Rho
proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Rho proteins. Since crystal structures
often lack C-terminal residues, this feature is not
available for annotation in many of the CDs in the
hierarchy.
Length = 171
Score = 29.1 bits (66), Expect = 6.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 203 VLIGDPGVGKTAII 216
V++GD VGKT ++
Sbjct: 4 VVVGDGAVGKTCLL 17
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.7 bits (65), Expect = 6.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 602 MFLGPTGVGKTELVKSLARLL 622
GP G GK+ L K LAR L
Sbjct: 2 WLYGPPGCGKSTLAKYLARAL 22
>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
mechanisms].
Length = 889
Score = 28.7 bits (64), Expect = 6.4
Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 35/215 (16%)
Query: 410 EVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLR--WQEGQR 467
++L+ + LK+ L L+ L L+ K L R W+E
Sbjct: 14 QLLNRESECLDGKDNYILELKEN--------LKALQSALEDLDAKRDDLERRVNWEEDVG 65
Query: 468 KILYVADLKKRLESMRNELAIAQRQGHFERAGEL--AYGLIPKTEKELDEAEKADSTAED 525
++Y + + E + L K + ++ K
Sbjct: 66 DLVY--LAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSK 123
Query: 526 MVQEV--VTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNA 583
+++EV + S + +V E S +G +E + N
Sbjct: 124 VLREVESLGSKGVFEVVGESLDPR------EKVETRPIQSE----SDVGLETMLEKLWNR 173
Query: 584 LRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSL 618
L ++D +G + G GVGKT L + +
Sbjct: 174 L------MEDDVGIVGIY---GMGGVGKTTLARQI 199
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 28.9 bits (65), Expect = 6.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 604 LGPTGVGKTELVKSLARLL 622
LGP G GK+ L+K+LA LL
Sbjct: 31 LGPNGAGKSTLLKTLAGLL 49
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1, and
A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 28.8 bits (65), Expect = 7.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 605 GPTGVGKTELVKSLAR 620
GP GVGKT L+KSL +
Sbjct: 46 GPPGVGKTTLIKSLVK 61
>gnl|CDD|29823 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class
II core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
archaea, the cytoplasm of eukaryotes and some bacteria..
Length = 261
Score = 28.6 bits (64), Expect = 7.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 515 EAEKADSTAEDMVQEVVTSDNI-ANIVSRWTGIPVDKMLESDREKF 559
E A +T E+ +EV+ ++ IPV K +++ EKF
Sbjct: 149 EGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKF 194
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 28.7 bits (65), Expect = 7.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 203 VLIGDPGVGKTAIIEGLASRIIN--GDIPESL-KGK------RLMALDMGALIA 247
VL G GVGK+ ++ L + G+I E L +G+ L L G L+
Sbjct: 39 VLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLI 92
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.5 bits (63), Expect = 7.7
Identities = 37/202 (18%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 410 EVLDELDRRIICLKIEKEALKKEKD-----------------SFSKGRLIELEKELSSLE 452
++L+EL++++ L+ + E ++ ++ + L ELE+ELS LE
Sbjct: 193 DLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLE 252
Query: 453 EKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKE 512
E+ L +E +++I +LK LE +R EL Q + + I + E E
Sbjct: 253 EELEELQEELEEAEKEI---EELKSELEELREELEELQEELLELKE------EIEELEGE 303
Query: 513 LDEA-EKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVI 571
+ E+ + ++ + + + + L+ + E+ + E+ + +
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEA---------LKEELEERETLLEELEQLLA 354
Query: 572 GQSAAVESVSNALRRFRAGLQD 593
A E + L L++
Sbjct: 355 ELEEAKEELEEKLSALLEELEE 376
>gnl|CDD|143827 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 28.3 bits (64), Expect = 8.0
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 14/92 (15%)
Query: 396 EASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKS 455
+A+AR + + E + EL R+I L+IE ++LKK+K S LE++L+ LEE+
Sbjct: 202 QAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQKAS--------LERQLAELEER- 252
Query: 456 HSLTLRWQEGQRKILYVADLKKRLESMRNELA 487
+ L L + Q I ++L++ L+ ++ E+A
Sbjct: 253 YELEL--ADYQDTI---SELEEELQQLKAEMA 279
>gnl|CDD|37804 KOG2593, KOG2593, KOG2593, Transcription initiation factor IIE,
alpha subunit [Transcription].
Length = 436
Score = 28.4 bits (63), Expect = 8.0
Identities = 12/68 (17%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRI---QLGRVLSL 780
+ + +++D + +VR + E + LD ++ + +R+ED+ ++++ QL ++++
Sbjct: 7 VVYDIPTALNDLLKKVVRGFYGGEHVLILDALLRRQCVREEDLKELLKFNKKQLRKLIAS 66
Query: 781 IKERNISM 788
++E +
Sbjct: 67 LREDKLIK 74
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 28.3 bits (63), Expect = 8.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 203 VLIGDPGVGKTAIIEGLASRII--NGDIPESL-KGK------RLMALDMGALIA 247
VL+G GVGK+ +I L + G+I E L +G+ L L G I
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWII 221
>gnl|CDD|35961 KOG0742, KOG0742, KOG0742, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 630
Score = 28.5 bits (63), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 595 QRPMGSFMFLGPTGVGKTELVKSLAR 620
Q P + +F GP G GKT + LAR
Sbjct: 381 QAPFRNILFYGPPGTGKTMFARELAR 406
>gnl|CDD|143943 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. This family
contains ribosomal protein S7 from prokaryotes and S5
from eukaryotes.
Length = 149
Score = 28.3 bits (64), Expect = 8.2
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING---DIPESLKGKRLMALDMG 243
+ +A +++ +T NP+ + + + SR + G +P + +R +AL +
Sbjct: 43 VYKAFEIIEEKTGKNPLEVLVQAIENVKPRVEVKSRRVGGATYQVPVEVSPERRVALAIR 102
Query: 244 ALIAGAKFRGE--FEERL 259
++ A+ R E+L
Sbjct: 103 WILKAARKRSGKSMAEKL 120
>gnl|CDD|31889 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 28.4 bits (63), Expect = 8.3
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 182 GRDDEMRRAIQVLSR---RTKNNPVL--IGDPGVGKTAIIEGLASRII 224
R D A ++L RT N V+ G PG GK+ +IE L +
Sbjct: 29 RRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR 76
>gnl|CDD|145125 pfam01797, Transposase_17, Transposase IS200 like. Transposases
are needed for efficient transposition of the insertion
sequence or transposon DNA. This family includes
transposases for IS200 from E. coli.
Length = 121
Score = 28.3 bits (64), Expect = 8.5
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 251 FRGEFEERLKSLLCEIRSEDGEIILFI----DELHVLVGAGKTDGAMDASNLLK 300
F GE EERLK ++ EI E G IL I D +H+LV LK
Sbjct: 19 FTGEVEERLKEIIREICEEYGCEILEINGMPDHVHLLVSLPPKLSISKLVQRLK 72
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 28.3 bits (63), Expect = 8.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 602 MFLGPTGVGKTELVKSLARLLFDDENSMIRID 633
+GP+G GK+ L++ LAR +D + + ID
Sbjct: 383 ALVGPSGSGKSTLIQLLAR-FYDPTSGEVLID 413
>gnl|CDD|38557 KOG3347, KOG3347, KOG3347, Predicted nucleotide kinase/nuclear
protein involved oxidative stress response [Nucleotide
transport and metabolism].
Length = 176
Score = 28.3 bits (63), Expect = 9.0
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 196 RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255
R + N ++ G PG GK+ + E LA + L +++ L+ +
Sbjct: 4 ERERPNILVTGTPGTGKSTLAERLAEK------------TGLEYIEISDLVKENNLYEGY 51
Query: 256 EERLKSLL 263
+E K +
Sbjct: 52 DEEYKCHI 59
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 28.4 bits (64), Expect = 9.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRID 633
+GP+G GK+ L+K L R L+D + I ID
Sbjct: 33 IVGPSGSGKSTLLKLLLR-LYDPTSGEILID 62
>gnl|CDD|35468 KOG0247, KOG0247, KOG0247, Kinesin-like protein [Cytoskeleton].
Length = 809
Score = 28.1 bits (62), Expect = 9.6
Identities = 44/276 (15%), Positives = 78/276 (28%), Gaps = 30/276 (10%)
Query: 334 QSLLVGEPTVTDTISILRGLKERYEQHHK-----VRISDSALVSAAVLSNRYITDRFLPD 388
Q + V P + S L +E Q + D L L D+ +
Sbjct: 434 QEVEVARPVIKKQPSGLTPGREFSNQSTCELGNSTLMEDEGLREIPDLPTFEEQDKNDKE 493
Query: 389 KAIDLMDEASARVRMQ------------IDTKPEVLDELDRRIICLKIEKEALKKEKDSF 436
L++E R+ ++ + L L + KKE+
Sbjct: 494 TLDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLESQMLS-SQLNDKKEQIEQ 552
Query: 437 SKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFE 496
+ + L+KE + E E + L + LE + EL Q++ +
Sbjct: 553 LRDEIERLKKENLTTEYSIEI-----LESTEYEEEIEALDQELEEQKMEL---QQKFSEK 604
Query: 497 RAGELAY-GLIPKTEKELDEAEKADSTAEDMV---QEVVTSDNIANIVSRWTGIPVDKML 552
+ G++ T E A K + +++ I P L
Sbjct: 605 KKAMAKVRGILANTSPECSVAAKLLELQSKLWFKDEKLKHLTAIIQTPPPPYQTPGRNPL 664
Query: 553 ESDREKFLRIETEISKSVIGQSAAVESVSNALRRFR 588
+ T +S SV + R R
Sbjct: 665 FEKDREATTSRTVMSSSVPQSLEFQPGHNAPAYRLR 700
>gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like
superfamily of small GTPases consists of several
families with an extremely high degree of structural and
functional similarity. The Ras superfamily is divided
into at least four families in eukaryotes: the Ras, Rho,
Rab, and Sar1/Arf families. This superfamily also
includes proteins like the GTP translation factors,
Era-like GTPases, and G-alpha chain of the
heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family regulate
initiation, elongation, termination, and release in
translation, and the Era-like GTPase family regulates
cell division, sporulation, and DNA replication. Members
of the Ras superfamily are identified by the GTP binding
site, which is made up of five characteristic sequence
motifs, and the switch I and switch II regions.
Length = 157
Score = 28.2 bits (63), Expect = 9.7
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
Query: 204 LIGDPGVGKTAIIEGLASRIING 226
++GD GVGKT+++ R++ G
Sbjct: 1 VVGDSGVGKTSLLN----RLLGG 19
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.136 0.375
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 10,025,469
Number of extensions: 555809
Number of successful extensions: 2409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2360
Number of HSP's successfully gapped: 247
Length of query: 853
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 751
Effective length of database: 4,059,619
Effective search space: 3048773869
Effective search space used: 3048773869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)