Query         gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 51
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 18:46:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780878.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2r6g_G Maltose transport syst  23.0      58  0.0017   14.7   4.2   28    3-30     11-38  (124)
  2 >1m56_D Cytochrome C oxidase;   22.0      61  0.0018   14.5   3.3   20    2-21     27-46  (51)
  3 >1qle_D Cytochrome AA3, ccytoc  18.9      72  0.0021   14.2   3.3   20    2-21     19-38  (43)
  4 >1w2i_A Acylphosphatase; hydro  13.2      87  0.0026   13.7   1.3   11    1-11     17-27  (91)
  5 >2bjd_A Acylphosphatase; hyper  10.7 1.2E+02  0.0034   13.1   1.3   11    1-11     27-37  (101)
  6 >1ulr_A Putative acylphosphata   9.3 1.4E+02  0.0041   12.7   1.3   11    1-11     15-25  (88)
  7 >1gxu_A Hydrogenase maturation   7.4 1.7E+02  0.0051   12.2   1.3   11    1-11     20-30  (91)
  8 >2fhm_A Probable acylphosphata   7.2 1.8E+02  0.0052   12.1   1.3   11    1-11     15-25  (91)
  9 >1urr_A CG18505 protein; acylp   7.2 1.8E+02  0.0052   12.1   1.3   11    1-11     24-34  (102)
 10 >3dp7_A SAM-dependent methyltr   7.1 1.8E+02  0.0052   12.1   1.0   11   22-32     54-64  (67)

No 1  
>>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:1-72,G:245-296)
Probab=23.05  E-value=58  Score=14.66  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7688999999999999999989999999
Q gi|254780878|r    3 FRFWVSRIQIFFIALLIVFSLSWFVFTL   30 (51)
Q Consensus         3 frfwvsriqiffiallivfslswfvftl   30 (51)
                      .|.|.+.+-+.....+|.|.+-|-|-.-
T Consensus        11 ~r~~~~~~~l~~~~~~il~Pl~wvv~~S   38 (124)
T 2r6g_G           11 ARLFITHLLLLLFIAAIMFPLLMVVAIS   38 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHEEEEEHHHHHHHHHHH
T ss_conf             5678878614364876389999999998


No 2  
>>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:)
Probab=22.04  E-value=61  Score=14.55  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=15.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             37688999999999999999
Q gi|254780878|r    2 GFRFWVSRIQIFFIALLIVF   21 (51)
Q Consensus         2 gfrfwvsriqiffiallivf   21 (51)
                      ||--|+.|.-|.-|++||-.
T Consensus        27 GFik~~t~~~i~ii~~liFl   46 (51)
T 1m56_D           27 GFVRMVTWAAVVIVAALIFL   46 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999


No 3  
>>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (D:)
Probab=18.87  E-value=72  Score=14.17  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=15.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             37688999999999999999
Q gi|254780878|r    2 GFRFWVSRIQIFFIALLIVF   21 (51)
Q Consensus         2 gfrfwvsriqiffiallivf   21 (51)
                      ||--|+.|.-|.-|++||-.
T Consensus        19 GFik~~t~~~i~ii~~lifl   38 (43)
T 1qle_D           19 GFIKGATWVSILSIAVLVFL   38 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999


No 4  
>>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} (A:)
Probab=13.18  E-value=87  Score=13.73  Aligned_cols=11  Identities=36%  Similarity=0.721  Sum_probs=8.2

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        17 VGFR~~v~~~A   27 (91)
T 1w2i_A           17 VGFRWSMQREA   27 (91)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             48749999999


No 5  
>>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A (A:)
Probab=10.71  E-value=1.2e+02  Score=13.07  Aligned_cols=11  Identities=36%  Similarity=0.576  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        27 VGFR~~v~~~A   37 (101)
T 2bjd_A           27 VGFRKFVQIHA   37 (101)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             08479999999


No 6  
>>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} (A:)
Probab=9.32  E-value=1.4e+02  Score=12.65  Aligned_cols=11  Identities=18%  Similarity=0.606  Sum_probs=7.8

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.+.-
T Consensus        15 VGFR~~~~~~A   25 (88)
T 1ulr_A           15 VGYRAFAQKKA   25 (88)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             27889999999


No 7  
>>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} (A:)
Probab=7.40  E-value=1.7e+02  Score=12.19  Aligned_cols=11  Identities=36%  Similarity=0.724  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        20 VGFR~~~~~~A   30 (91)
T 1gxu_A           20 VGFRPFVWQLA   30 (91)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             27879999999


No 8  
>>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A (A:)
Probab=7.20  E-value=1.8e+02  Score=12.14  Aligned_cols=11  Identities=36%  Similarity=0.836  Sum_probs=7.8

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        15 VGFR~~v~~~A   25 (91)
T 2fhm_A           15 VGFRYFVQMEA   25 (91)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             17889999999


No 9  
>>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} (A:)
Probab=7.16  E-value=1.8e+02  Score=12.13  Aligned_cols=11  Identities=27%  Similarity=0.120  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        24 VGFR~~v~~~A   34 (102)
T 1urr_A           24 VFFRKHTSHEA   34 (102)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             68349999999


No 10 
>>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:100-166)
Probab=7.13  E-value=1.8e+02  Score=12.15  Aligned_cols=11  Identities=45%  Similarity=1.002  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHH
Q ss_conf             98999999999
Q gi|254780878|r   22 SLSWFVFTLLY   32 (51)
Q Consensus        22 slswfvftlly   32 (51)
                      .-|||-|.-.|
T Consensus        54 k~SWF~FDH~Y   64 (67)
T 3dp7_A           54 QKSWFGFDHFY   64 (67)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
T ss_conf             99999888887


Done!