Query gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 51 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 18:46:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780878.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2r6g_G Maltose transport syst 23.0 58 0.0017 14.7 4.2 28 3-30 11-38 (124) 2 >1m56_D Cytochrome C oxidase; 22.0 61 0.0018 14.5 3.3 20 2-21 27-46 (51) 3 >1qle_D Cytochrome AA3, ccytoc 18.9 72 0.0021 14.2 3.3 20 2-21 19-38 (43) 4 >1w2i_A Acylphosphatase; hydro 13.2 87 0.0026 13.7 1.3 11 1-11 17-27 (91) 5 >2bjd_A Acylphosphatase; hyper 10.7 1.2E+02 0.0034 13.1 1.3 11 1-11 27-37 (101) 6 >1ulr_A Putative acylphosphata 9.3 1.4E+02 0.0041 12.7 1.3 11 1-11 15-25 (88) 7 >1gxu_A Hydrogenase maturation 7.4 1.7E+02 0.0051 12.2 1.3 11 1-11 20-30 (91) 8 >2fhm_A Probable acylphosphata 7.2 1.8E+02 0.0052 12.1 1.3 11 1-11 15-25 (91) 9 >1urr_A CG18505 protein; acylp 7.2 1.8E+02 0.0052 12.1 1.3 11 1-11 24-34 (102) 10 >3dp7_A SAM-dependent methyltr 7.1 1.8E+02 0.0052 12.1 1.0 11 22-32 54-64 (67) No 1 >>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:1-72,G:245-296) Probab=23.05 E-value=58 Score=14.66 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7688999999999999999989999999 Q gi|254780878|r 3 FRFWVSRIQIFFIALLIVFSLSWFVFTL 30 (51) Q Consensus 3 frfwvsriqiffiallivfslswfvftl 30 (51) .|.|.+.+-+.....+|.|.+-|-|-.- T Consensus 11 ~r~~~~~~~l~~~~~~il~Pl~wvv~~S 38 (124) T 2r6g_G 11 ARLFITHLLLLLFIAAIMFPLLMVVAIS 38 (124) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHEEEEEHHHHHHHHHHH T ss_conf 5678878614364876389999999998 No 2 >>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:) Probab=22.04 E-value=61 Score=14.55 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=15.7 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 37688999999999999999 Q gi|254780878|r 2 GFRFWVSRIQIFFIALLIVF 21 (51) Q Consensus 2 gfrfwvsriqiffiallivf 21 (51) ||--|+.|.-|.-|++||-. T Consensus 27 GFik~~t~~~i~ii~~liFl 46 (51) T 1m56_D 27 GFVRMVTWAAVVIVAALIFL 46 (51) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 No 3 >>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (D:) Probab=18.87 E-value=72 Score=14.17 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=15.6 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 37688999999999999999 Q gi|254780878|r 2 GFRFWVSRIQIFFIALLIVF 21 (51) Q Consensus 2 gfrfwvsriqiffiallivf 21 (51) ||--|+.|.-|.-|++||-. T Consensus 19 GFik~~t~~~i~ii~~lifl 38 (43) T 1qle_D 19 GFIKGATWVSILSIAVLVFL 38 (43) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 No 4 >>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} (A:) Probab=13.18 E-value=87 Score=13.73 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.2 Q ss_pred CCHHHHHHHHH Q ss_conf 93768899999 Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51) Q Consensus 1 mgfrfwvsriq 11 (51) .|||.|+.++- T Consensus 17 VGFR~~v~~~A 27 (91) T 1w2i_A 17 VGFRWSMQREA 27 (91) T ss_dssp SSHHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 48749999999 No 5 >>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A (A:) Probab=10.71 E-value=1.2e+02 Score=13.07 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=7.9 Q ss_pred CCHHHHHHHHH Q ss_conf 93768899999 Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51) Q Consensus 1 mgfrfwvsriq 11 (51) .|||.|+.++- T Consensus 27 VGFR~~v~~~A 37 (101) T 2bjd_A 27 VGFRKFVQIHA 37 (101) T ss_dssp SSHHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 08479999999 No 6 >>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} (A:) Probab=9.32 E-value=1.4e+02 Score=12.65 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=7.8 Q ss_pred CCHHHHHHHHH Q ss_conf 93768899999 Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51) Q Consensus 1 mgfrfwvsriq 11 (51) .|||.|+.+.- T Consensus 15 VGFR~~~~~~A 25 (88) T 1ulr_A 15 VGYRAFAQKKA 25 (88) T ss_dssp SSHHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 27889999999 No 7 >>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} (A:) Probab=7.40 E-value=1.7e+02 Score=12.19 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=7.9 Q ss_pred CCHHHHHHHHH Q ss_conf 93768899999 Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51) Q Consensus 1 mgfrfwvsriq 11 (51) .|||.|+.++- T Consensus 20 VGFR~~~~~~A 30 (91) T 1gxu_A 20 VGFRPFVWQLA 30 (91) T ss_dssp SSHHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 27879999999 No 8 >>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A (A:) Probab=7.20 E-value=1.8e+02 Score=12.14 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=7.8 Q ss_pred CCHHHHHHHHH Q ss_conf 93768899999 Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51) Q Consensus 1 mgfrfwvsriq 11 (51) .|||.|+.++- T Consensus 15 VGFR~~v~~~A 25 (91) T 2fhm_A 15 VGFRYFVQMEA 25 (91) T ss_dssp SCHHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 17889999999 No 9 >>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} (A:) Probab=7.16 E-value=1.8e+02 Score=12.13 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=7.3 Q ss_pred CCHHHHHHHHH Q ss_conf 93768899999 Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51) Q Consensus 1 mgfrfwvsriq 11 (51) .|||.|+.++- T Consensus 24 VGFR~~v~~~A 34 (102) T 1urr_A 24 VFFRKHTSHEA 34 (102) T ss_dssp SSHHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 68349999999 No 10 >>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:100-166) Probab=7.13 E-value=1.8e+02 Score=12.15 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=8.0 Q ss_pred HHHHHHHHHHH Q ss_conf 98999999999 Q gi|254780878|r 22 SLSWFVFTLLY 32 (51) Q Consensus 22 slswfvftlly 32 (51) .-|||-|.-.| T Consensus 54 k~SWF~FDH~Y 64 (67) T 3dp7_A 54 QKSWFGFDHFY 64 (67) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHH T ss_conf 99999888887 Done!