BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62] (51 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62] gi|254040555|gb|ACT57351.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62] Length = 51 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 51/51 (100%), Positives = 51/51 (100%) Query: 1 MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51 MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK Sbjct: 1 MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51 >gi|109900048|ref|YP_663303.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas atlantica T6c] gi|109702329|gb|ABG42249.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 781 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 4 RFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRL 39 RF R+ + F+ L +VF+++ F +Y+IGDV+L Sbjct: 20 RFGTLRVSVLFVILTLVFTMTGTYFLRIYIIGDVKL 55 >gi|332308096|ref|YP_004435947.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175425|gb|AEE24679.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 781 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 24/36 (66%) Query: 4 RFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRL 39 RF R+ + F+ L ++F+++ F +Y+IGDV+L Sbjct: 20 RFGTLRVSVLFVILTLIFTMTGTYFLRIYIIGDVKL 55 Searching..................................................done Results from round 2 CONVERGED! >gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62] gi|254040555|gb|ACT57351.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62] Length = 51 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 51/51 (100%), Positives = 51/51 (100%) Query: 1 MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51 MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK Sbjct: 1 MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.350 0.155 0.548 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,267,255,997 Number of Sequences: 14124377 Number of extensions: 48393928 Number of successful extensions: 475574 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 475558 Number of HSP's gapped (non-prelim): 19 length of query: 51 length of database: 4,842,793,630 effective HSP length: 24 effective length of query: 27 effective length of database: 4,503,808,582 effective search space: 121602831714 effective search space used: 121602831714 T: 11 A: 40 X1: 16 ( 8.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.9 bits) S2: 76 (33.6 bits)