HHsearch alignment for GI: 254780879 and conserved domain: COG2190
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism].
Probab=90.43 E-value=1.2 Score=23.51 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCEEEEE-------EEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEEC
Q ss_conf 340443464200302679672797159679996-------5308970079998399748820021445411889978834
Q gi|254780879|r 505 PILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKA-------NWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQ 577 (652)
Q Consensus 505 Pilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~a-------g~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~q 577 (652)
T Consensus 25 ~vFs~k~mGdGiAI~-P~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLi-Hi-GiDTV~L~GegF~~~v~~Gd~Vk~ 101 (156)
T COG2190 25 PVFSEKMVGDGVAIK-PSEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILI-HI-GIDTVKLNGEGFESLVKEGDKVKA 101 (156)
T ss_pred HHHHCCCCCCCEEEE-CCCCEEEECCCCEEEEEEECCCEEEEECCCCCEEEE-EE-CEEEEEECCCCEEEEEECCCEECC
T ss_conf 676415634867994-689959812685899985178479998389959999-95-640586889324787507998815
Q ss_pred CCEEEEEC
Q ss_conf 95899841
Q gi|254780879|r 578 GQIIGWIG 585 (652)
Q Consensus 578 GQvIG~vG 585 (652)
T Consensus 102 Gd~Li~fD 109 (156)
T COG2190 102 GDPLLEFD 109 (156)
T ss_pred CCEEEEEC
T ss_conf 98989997