HHsearch alignment for GI: 254780879 and conserved domain: COG4942

Probab=99.94  E-value=2.5e-27  Score=211.05  Aligned_cols=128  Identities=30%  Similarity=0.465  Sum_probs=112.6

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCCE
Q ss_conf             56610000011233345410235676414340443464200302679672797159679996530897007999839974
Q gi|254780879|r  476 ENGKSSRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGY  555 (652)
Q Consensus       476 ~~G~S~~k~llr~Pv~~~risS~Fg~R~hPilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~Gy  555 (652)
T Consensus       289 t~~~~~~~G~l~~PV~G-~il~rFG~~~~g----g~~wkG~vi~a~~Ga~V~A~AdG~VvyA~~l~GYG~vvIldhG~gy  363 (420)
T COG4942         289 TGGFGALRGQLAWPVTG-RILRRFGQADGG----GLRWKGMVIGASAGATVKAIADGRVVYADWLRGYGLVVILDHGGGY  363 (420)
T ss_pred             CCCCCCCCCCCCCCCCC-HHHHHHCCCCCC----CCCCCCEEEECCCCCEEEECCCCEEEECHHHCCCCEEEEEECCCCC
T ss_conf             55320025776888787-078773456788----7610675873599982562069569954332567569999748853


Q ss_pred             EEEEHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECCEECCCCE
Q ss_conf             8820021445411889978834958998416678887426889978678836620
Q gi|254780879|r  556 VSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVDSTK  610 (652)
Q Consensus       556 ~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsTG~STGPHLHfEv~vnG~~VdP~~  610 (652)
T Consensus       364 ~slyg~~~~i~--v~~G~~V~AGepIa~~G~sgg~~~p~LYfEiR~~G~pvnP~p  416 (420)
T COG4942         364 HSLYGGNQSIL--VNPGQFVKAGEPIALVGSSGGQGRPALYFEIRRQGQPVNPQP  416 (420)
T ss_pred             EEEECCCCEEE--ECCCCEEECCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCHH
T ss_conf             78861664221--068977556971532267789998410021460597479512