HHsearch alignment for GI: 254780879 and conserved domain: PRK10871
>PRK10871 nlpD lipoprotein NlpD; Provisional.
Probab=100.00 E-value=1.5e-43 Score=325.28 Aligned_cols=119 Identities=34% Similarity=0.592 Sum_probs=110.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEE-CCCCCEEEEECCCCEEEEEHHHH
Q ss_conf 11233345410235676414340443464200302679672797159679996530-89700799983997488200214
Q gi|254780879|r 485 LLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA-GGYGKQTLIHHGNGYVSSYNHQD 563 (652)
Q Consensus 485 llr~Pv~~~risS~Fg~R~hPilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~-~GyGn~V~I~H~~Gy~T~YaHlS 563 (652)
T Consensus 254 ~W~WP~~G-kVi~~Fs~~~~g-------nkGidia~~~G~pV~Aaa~G~VvyaG~~l~gyGnliiIkH~~~~lsaYahn~ 325 (374)
T PRK10871 254 TWRWPTDG-KVIENFGASEGG-------NKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHND 325 (374)
T ss_pred CCCCCCCC-CCCCCCCCCCCC-------CCEEEEECCCCCEEEECCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 34377898-685404777788-------6507985789981785378389992478787762899984998678616766
Q ss_pred HHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECCEECCCCEECCCC
Q ss_conf 4541188997883495899841667888742688997867883662000788
Q gi|254780879|r 564 AIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVDSTKVRIPE 615 (652)
Q Consensus 564 ~~a~gV~~G~~V~qGQvIG~vGsTG~STGPHLHfEv~vnG~~VdP~~~~lp~ 615 (652)
T Consensus 326 ~~l--Vkeg~~V~~Gq~Ia~~G~tg~~~-~~LHFEiR~~g~pvdP~~y-LPk 373 (374)
T PRK10871 326 TML--VREQQEVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRY-LPQ 373 (374)
T ss_pred CCC--CCCCCEECCCCEEEEECCCCCCC-CEEEEEEEECCEECCHHHH-CCC
T ss_conf 266--78889988999898643789998-3089999779986694897-649