HHsearch alignment for GI: 254780879 and conserved domain: cd00118

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.

Probab=97.60  E-value=9.8e-05  Score=52.16  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=40.4

Q ss_pred             EEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEE
Q ss_conf             6884179708999997499989999999985401561016998889999
Q gi|254780879|r  278 LIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIG  326 (652)
Q Consensus       278 ~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~  326 (652)
T Consensus         2 ~y~V~~GDTl~~Ia~~~~v~~~~l~~~----N~~~~~~~l~~Gq~l~iP   46 (46)
T cd00118           2 TYTVKKGDTLSSIAQRYGISVEELLKL----NGLSDPDNLQVGQKLKIP   46 (46)
T ss_pred             EEEECCCCCHHHHHHHHCCCHHHHHHH----CCCCCCCCCCCCCEEEEC
T ss_conf             479898999999999989679999986----699997716769999609