HHsearch alignment for GI: 254780879 and conserved domain: pfam04225
>pfam04225 OapA Opacity-associated protein A LysM-like domain. This family includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation. This is a LysM-like domain.
Probab=98.61 E-value=6.9e-07 Score=67.30 Aligned_cols=82 Identities=9% Similarity=0.134 Sum_probs=68.3
Q ss_pred EEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 13688417970899999749998999999998540156101699888999972788864058999716883489998427
Q gi|254780879|r 276 DDLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALND 355 (652)
Q Consensus 276 e~~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~~~~~~~~~~~~r~si~~~~~~~~~va~~d 355 (652)
T Consensus 2 W~~y~V~~GdTLs~iFr~~~L~~sDv~~~~~~~g~~k~Ls~Lk~Gq~v~~~~n~~G---~l~~L~i~~~-~~~v~f~R~~ 77 (85)
T pfam04225 2 WKTYQVPKGDTLMQVFRDNNLPISDVNAMAKVEGADKPLSNIKSGQLVRIKLNAQG---RVDELQIENG-AGSVMFFRQS 77 (85)
T ss_pred CEEEEECCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCC---CEEEEEEECC-CEEEEEEECC
T ss_conf 70678079985999998829998999999861156780544589999999999999---8899998149-9489999818
Q ss_pred CCCEEE
Q ss_conf 884320
Q gi|254780879|r 356 NNEYVL 361 (652)
Q Consensus 356 ~g~fv~ 361 (652)
T Consensus 78 DGsf~r 83 (85)
T pfam04225 78 DGSFGR 83 (85)
T ss_pred CCCEEE
T ss_conf 986452