HHsearch alignment for GI: 254780879 and conserved domain: smart00257
>smart00257 LysM Lysin motif.
Probab=97.53 E-value=0.00012 Score=51.59 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=39.1
Q ss_pred EEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEE
Q ss_conf 688417970899999749998999999998540156101699888999
Q gi|254780879|r 278 LIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRI 325 (652)
Q Consensus 278 ~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I 325 (652)
T Consensus 1 ty~V~~GDTl~~IA~~~~v~~~~l~~~----N~~~~~~~l~~Gq~l~I 44 (44)
T smart00257 1 TYTVKKGDTLSSIARRYGISVSDLLEL----NNILDPDNLQVGQKLKI 44 (44)
T ss_pred CCEECCCCCHHHHHHHHCCCHHHHHHH----CCCCCCCCCCCCCEEEC
T ss_conf 908798988999999989689999987----69999772487999859