HHsearch alignment of GI: 254780879 and MMDB domain: 1hcz_A_169-231

>1hcz_A (A:169-231) Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa}

Probab=93.27  E-value=0.13  Score=29.83  Aligned_cols=57  Identities=19%  Similarity=0.094  Sum_probs=42.7

Q ss_pred             CCEEECCCCEEEEEEEECCCCCEEEEECC-CCEEEEEH-HHHHHHHCCCCCCEEECCCEE
Q ss_conf             72797159679996530897007999839-97488200-214454118899788349589
Q gi|254780879|r  524 TPIVAVGDGIVEKANWAGGYGKQTLIHHG-NGYVSSYN-HQDAIAKNIKAGTAVKQGQII  581 (652)
Q Consensus       524 TPI~Aag~G~V~~ag~~~GyGn~V~I~H~-~Gy~T~Ya-HlS~~a~gV~~G~~V~qGQvI  581 (652)
                      +.|+|--+|+|...+...-.++.|.|... +|-...|. ...+-. -|+.|++|+.||.|
T Consensus         1 nAiiae~~G~V~~i~~~~~g~~~i~I~~~~~g~~~~y~ip~g~~l-~V~~Gd~V~~G~~L   59 (63)
T 1hcz_A            1 TVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLEL-LVSEGESIKLDQPL   59 (63)
T ss_dssp             SCCBCSSCEEEEEEEECTTSCEEEEEEETTTTEEEEEEECTTCCB-CCCTTCEECTTCBS
T ss_pred             CEEECCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEE-EECCCCEEECCCCC
T ss_conf             248256770788867668885699999569996788815999858-88289888469855