HHsearch alignment of GI: 254780879 and MMDB domain: 2a6h_C_593-659

>2a6h_C (C:593-659) DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}

Probab=96.18  E-value=0.0068  Score=38.72  Aligned_cols=53  Identities=21%  Similarity=0.463  Sum_probs=41.7

Q ss_pred             CCEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHH-----------CCCCCCEEECCCEEE
Q ss_conf             72797159679996530897007999839974882002144541-----------188997883495899
Q gi|254780879|r  524 TPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAK-----------NIKAGTAVKQGQIIG  582 (652)
Q Consensus       524 TPI~Aag~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~-----------gV~~G~~V~qGQvIG  582 (652)
                      |-|.|-.+|+|+|..     ++.|.|+..+|-...|. |.+|-+           -|++|++|++||+|+
T Consensus         1 a~i~A~~~G~V~yvd-----~~~I~i~~~~~~~~~Y~-L~kf~RSNq~TcinQrPiV~~G~~V~kG~ilA   64 (67)
T 2a6h_C            1 AALYAEEDGEVAKVD-----GNRIVVRYEDGRLVEYP-LRRFYRSNQGTALDQRPRVVVGQRVRKGDLLA   64 (67)
T ss_dssp             CSEECSSSEEEEEEC-----SSBEEEEETTTEEECCB-CCCSEECTTSCEECCEECCCSSCCBCTTCEEE
T ss_pred             EEEEEECCCCCCEEC-----CCEEEEECCCCCCCEEC-CCCCCCCCHHHHHCCCCCCCCCCEEECCCEEC
T ss_conf             467740366421012-----64389974778631124-53545553335742687311473664374634