HHsearch alignment of GI: 254780879 and MMDB domain: 3it5_A_1-134_171-182
>3it5_A (A:1-134,A:171-182) Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=99.96 E-value=7.6e-29 Score=221.32 Aligned_cols=113 Identities=26% Similarity=0.336 Sum_probs=104.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHH
Q ss_conf 23334541023567641434044346420030267967279715967999653089700799983997488200214454
Q gi|254780879|r 487 RTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIA 566 (652)
Q Consensus 487 r~Pv~~~risS~Fg~R~hPilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a 566 (652)
.+|+...+++++|+.+++. .+.|.||||+++.|+||+|+.+|+|.++ +||+|+|+|.+|+.|.|+||+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~----~~~h~Gidi~a~~g~~V~A~~~G~V~~~-----gG~~ViI~h~~g~~t~Y~hl~~~~ 86 (146)
T 3it5_A 16 SWQPNGAHSNTGSGYPYSS----FDASYDWPRWGSATYSVVAAHAGTVRVL-----SRCQVRVTHPSGWATNYYHMDQIQ 86 (146)
T ss_dssp EEEECCCBCTTSSSSSCCE----EEEESSCCCTTSCCCEEECSSSEEEEEE-----ETTEEEEECTTSEEEEEESEESCC
T ss_pred CCCCCCCCCCCCCCCCCCC----EEECCCCCEECCCCCEEEEEECCEEEEE-----CCEEEEEEECCCCCCCEECCEECC
T ss_conf 1478786550897884188----8606898647179995999765657785-----278999972883464464130033
Q ss_pred HCCCCCCEEECCCEEEE--------ECCCCCCCCCEEEEEEEECCEECCCCE
Q ss_conf 11889978834958998--------416678887426889978678836620
Q gi|254780879|r 567 KNIKAGTAVKQGQIIGW--------IGTTGLSTGPHLHYELIVNGIKVDSTK 610 (652)
Q Consensus 567 ~gV~~G~~V~qGQvIG~--------vGsTG~STGPHLHfEv~vnG~~VdP~~ 610 (652)
|++||+|++||+||+ +|+||.+++|||||||+.||++|||.-
T Consensus 87 --V~~G~~V~~G~~IG~~g~~~~~~~G~~G~~~~pHLHfeir~~g~~vdP~~ 136 (146)
T 3it5_A 87 --VSNGQQVSADTKLGVYAGNINTALCEGGSSTGPHLHFSLLYNGAFVSLAF 136 (146)
T ss_dssp --CCTTCEECTTCEEEEECSSHHHHTTTSCCCSSSCEEEEEEETTEECCCTT
T ss_pred --CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCC
T ss_conf --12674414883886714766653157777688678999998998969976