HHsearch results for GI: 254780879 and protein with PDBid: 1q90_A

>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=90.20  E-value=0.25  Score=26.70  Aligned_cols=106  Identities=16%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             CCCCCCCEEECCCCEEEEEEEE--CCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCC---
Q ss_conf             2679672797159679996530--89700799983997488200214454118899788349589984166788874---
Q gi|254780879|r  519 AAPRGTPIVAVGDGIVEKANWA--GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGP---  593 (652)
Q Consensus       519 aAp~GTPI~Aag~G~V~~ag~~--~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsTG~STGP---  593 (652)
                      .-|.-+.+.|..+|+|.+....  ..-|+.|.|...+|-...|.=--.-.--|+.|+.|+.||.+        +++|   
T Consensus       164 ~KsnN~a~~As~aGtIs~I~~~~~eKG~~~I~I~~~dGe~v~~~IP~G~~LiV~eGd~VkaGq~L--------T~nPnvg  235 (292)
T 1q90_A          164 KKSNNTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPL--------TNNPNVG  235 (292)
T ss_dssp             CCCTTSCCBCSSSEEEEEEEECCTTTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBS--------BCCCCCC
T ss_pred             CCCCCCEEECCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCC--------CCCCCCC
T ss_conf             05778668167875998854402678978999988999889997489997896689998089803--------4698767


Q ss_pred             ---EEEEEEEECCEECCCCEECCCC----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ---2688997867883662000788----787888999999999999999
Q gi|254780879|r  594 ---HLHYELIVNGIKVDSTKVRIPE----RENLKGDLLQRFAMEKKRINS  636 (652)
Q Consensus       594 ---HLHfEv~vnG~~VdP~~~~lp~----~~~l~~~~l~~F~~~~~~id~  636 (652)
                         ...-||    ...||++|+=.-    .-.|.-..|--.++|.+++..
T Consensus       236 gfgq~d~eI----vlqdp~Ri~G~~af~~~v~l~Qi~LVlkkkq~ekvQ~  281 (292)
T 1q90_A          236 GFGQAETEI----VLQNPARIQGLLVFFSFVLLTQVLLVLKKKQFEKVQL  281 (292)
T ss_dssp             EEEEEEEEE----EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEE----CCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_conf             756665325----3467668665899998988756011115246887722