HHsearch results for GI: 254780879 and protein with PDBid: 1q90_A
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=90.20 E-value=0.25 Score=26.70 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCCCCCCEEECCCCEEEEEEEE--CCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCC---
Q ss_conf 2679672797159679996530--89700799983997488200214454118899788349589984166788874---
Q gi|254780879|r 519 AAPRGTPIVAVGDGIVEKANWA--GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGP--- 593 (652)
Q Consensus 519 aAp~GTPI~Aag~G~V~~ag~~--~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsTG~STGP--- 593 (652)
.-|.-+.+.|..+|+|.+.... ..-|+.|.|...+|-...|.=--.-.--|+.|+.|+.||.+ +++|
T Consensus 164 ~KsnN~a~~As~aGtIs~I~~~~~eKG~~~I~I~~~dGe~v~~~IP~G~~LiV~eGd~VkaGq~L--------T~nPnvg 235 (292)
T 1q90_A 164 KKSNNTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPL--------TNNPNVG 235 (292)
T ss_dssp CCCTTSCCBCSSSEEEEEEEECCTTTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBS--------BCCCCCC
T ss_pred CCCCCCEEECCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCC--------CCCCCCC
T ss_conf 05778668167875998854402678978999988999889997489997896689998089803--------4698767
Q ss_pred ---EEEEEEEECCEECCCCEECCCC----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---2688997867883662000788----787888999999999999999
Q gi|254780879|r 594 ---HLHYELIVNGIKVDSTKVRIPE----RENLKGDLLQRFAMEKKRINS 636 (652)
Q Consensus 594 ---HLHfEv~vnG~~VdP~~~~lp~----~~~l~~~~l~~F~~~~~~id~ 636 (652)
...-|| ...||++|+=.- .-.|.-..|--.++|.+++..
T Consensus 236 gfgq~d~eI----vlqdp~Ri~G~~af~~~v~l~Qi~LVlkkkq~ekvQ~ 281 (292)
T 1q90_A 236 GFGQAETEI----VLQNPARIQGLLVFFSFVLLTQVLLVLKKKQFEKVQL 281 (292)
T ss_dssp EEEEEEEEE----EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEE----CCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_conf 756665325----3467668665899998988756011115246887722