RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780879|ref|YP_003065292.1| hypothetical protein
CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62]
(652 letters)
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural
genomics, PSI, protein structure initiative; 1.90A
{Vibrio cholerae} (A:206-361)
Length = 156
Score = 142 bits (360), Expect = 1e-34
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 489 PVPFGRMTSGFGM-RYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQT 547
++TSGF R HP+ G H G D+A P G P+ + GDG V G
Sbjct: 3 KAY-RQITSGFNPKRKHPVTGRVVPHNGTDFATPIGAPVYSTGDGKVIVVRKHPYAGNYL 61
Query: 548 LIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVD 607
+I H + Y + Y H D I +K G VK+GQ I G TG TGPHLH+E++V VD
Sbjct: 62 VIEHNSVYKTRYLHLDKI--LVKKGQLVKRGQKIALAGATGRLTGPHLHFEVLVRNRPVD 119
Query: 608 STKVRIPERENLKGDLLQRFAMEKKRINSLLNNGEN 643
+ K +P ++L + F + ++ +
Sbjct: 120 AMKADLPIAKSLSSNQKTSFLARVSEFDHEGHHHHH 155
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
(A:116-267)
Length = 152
Score = 131 bits (331), Expect = 2e-31
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 466 PVDGSVEYFNENGKSSRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTP 525
+ + Y + +L PV G ++S FG+R H+G+D+A P GTP
Sbjct: 19 LAEQTAAYRRFSPGLPSNLMLDKPVD-GPLSSPFGLRRFFNGEERNPHSGLDFAVPAGTP 77
Query: 526 IVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIG 585
I A G V GK + HG G++S + H I ++K G V +G ++G +G
Sbjct: 78 IKAPAAGKVILIGDYFFNGKTVFVDHGQGFISMFCHLSKI--DVKLGQQVPRGGVLGKVG 135
Query: 586 TTGLSTGPHLHYELIVN 602
TG +TGPH+H+ + +N
Sbjct: 136 ATGRATGPHMHWNVSLN 152
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease
asparagine switch; 1.30A {Staphylococcus aureus subsp}
(A:83-291)
Length = 209
Score = 129 bits (324), Expect = 1e-30
Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 8/197 (4%)
Query: 418 QEHLKPTDFLETFFSVNH--ANNQASDDSELLYIHARFGETRTRFYRF---LNPVDGSVE 472
D + S + N + + Y V+
Sbjct: 2 VNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNG 61
Query: 473 YFNENGKSSRP-FLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGD 531
N+NG S+ +TS ++ + H GVD+A P +P+ ++ D
Sbjct: 62 TSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTD 121
Query: 532 GIVEKANWAGGYGKQT-LIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLS 590
G V +A W+ G I N + + + AG VK G I + G+TG S
Sbjct: 122 GTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNN-RLTVSAGDKVKAGDQIAYSGSTGNS 180
Query: 591 TGPHLHYELIVNGIKVD 607
T PH+H++ + GI
Sbjct: 181 TAPHVHFQRMSGGIGNQ 197
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein;
1.80A {Bacteriophage phi-29} (A:166-334)
Length = 169
Score = 128 bits (322), Expect = 2e-30
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 486 LRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGT-PIVAVGDGIVEKANWAG--- 541
+ P+ ++ G + + +D+ P A D A
Sbjct: 4 AQFPMDIINISQGENGSFSH-----KGTLCIDFVGKTEKYPYYAPCDCTCVWRGDASAYL 58
Query: 542 GYGKQTLIHHGNGYVSSYNHQDAIAKNI--KAGTAVKQGQIIGWIGTTGLSTGPHLHYEL 599
+ + +G V + + G +K+G ++G G G TG H H+ +
Sbjct: 59 AWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTGIGGNVTGDHWHFNV 118
Query: 600 IVNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNN 640
I TK + + FA+ I +
Sbjct: 119 IDGKEYQGWTKKPDSCLAGTELHIYDVFAVNNVEIINGNGY 159
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell
membrane, cell outer membrane, hydrolase, membrane,
metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB:
3it7_A* (A:1-134,A:171-182)
Length = 146
Score = 115 bits (289), Expect = 2e-26
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 19/127 (14%)
Query: 489 PVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTL 548
+G G Y +VA G V + Q
Sbjct: 18 QPNGAHSNTGSGYPYSSF----DASYDWPRWGSATYSVVAAHAGTVRVLSR-----CQVR 68
Query: 549 IHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIG--------WIGTTGLSTGPHLHYELI 600
+ H +G+ ++Y H D I + G V +G + G STGPHLH+ L+
Sbjct: 69 VTHPSGWATNYYHMDQI--QVSNGQQVSADTKLGVYAGNINTALCEGGSSTGPHLHFSLL 126
Query: 601 VNGIKVD 607
NG V
Sbjct: 127 YNGAFVS 133
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural
genomics, PSI, protein structure initiative; 1.90A
{Vibrio cholerae} (A:96-205)
Length = 110
Score = 72.9 bits (179), Expect = 1e-13
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 386 IYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEHLKPTDFLETFFSVNHANNQASDDSE 445
I + G+ S+ V I + + ++ L+ D + + + +SE
Sbjct: 12 INGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVKQQYLGEHNTGNSE 71
Query: 446 LLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKSSRPFLLRTP 489
+ I + + + + +++ G S R P
Sbjct: 72 IKAISFKLAKGDVSAFLAEDG-----RFYDRAGNSLERAFNRYP 110
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase
holoenzyme, streptolydigin, antibiotic, transcription
regulation; HET: STD; 2.40A {Thermus thermophilus}
(D:1244-1362)
Length = 119
Score = 37.5 bits (87), Expect = 0.005
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 511 RMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIK 570
R+ + P+ +++ DG+V K ++ G+ Y +K
Sbjct: 15 RVIELFEARRPKAKAVISEIDGVV---RIEETEEKLSVFVESEGFSKEYKLPKEARLLVK 71
Query: 571 AGTAVKQGQIIGWIGTTGLSTGP-HLHYELIVNGIKV 606
G V+ GQ L+ G H L G +
Sbjct: 72 DGDYVEAGQP--------LTRGAIDPHQLLEAKGPEA 100
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET:
KHP; 1.20A {Geobacillus stearothermophilus}
(A:1-22,A:312-502)
Length = 213
Score = 30.3 bits (68), Expect = 0.72
Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 381 EESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEHLKPTDFLETFFSVN-HANNQ 439
E+ N D + + + ++ + LA VN+ + + +
Sbjct: 30 EDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPIMTEKNGPAWKQTIYYPFMH 89
Query: 440 ASD--DSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGK 479
AS L+ + ++ + + ++ Y E +
Sbjct: 90 ASVYGRGVALHPVISSPKYDSKDFTDVPYLESIAVYNEEKEE 131
>3dnp_A Stress response protein YHAX; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.85A {Bacillus
subtilis} (A:86-200)
Length = 115
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 133 PFAYARMTFATPYPKVKDHPKFDPLKI---FSEGKIESSSQMLMDTIHNVDSFEVTTQKI 189
P Y + + D P I ++ + VD V +K+
Sbjct: 51 PIFYPVQFVESLSDLLXDEP-VSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKL 109
Query: 190 NF 191
N
Sbjct: 110 NI 111
>3iag_C Recombining binding protein suppressor of hairless;
protein-DNA complex, signaling, transcription, notch,
activator, alternative splicing; HET: XYL; 2.00A {Mus
musculus} PDB: 3brg_C* 2f8x_C (C:149-308)
Length = 160
Score = 28.2 bits (63), Expect = 3.2
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 218 FLLHNKKNQSFTLYYAD----PQTLDQRHDHPITYSKKIKIIEENRTITSPQVLIDKI 271
F +++ +F ++ D D I Y + +K++ + P+++I K+
Sbjct: 36 FHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKV 93
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 26.7 bits (58), Expect = 8.5
Identities = 27/184 (14%), Positives = 48/184 (26%), Gaps = 44/184 (23%)
Query: 69 QKIAIPAKLSH---------QTSEENAINLSAK-LSSMQRARLSPKTKSKHPEKIII--- 115
Q+ A+P LS+ Q+ + K + P+ I +
Sbjct: 146 QEKALPLLLSNPPRNMIGQSQSG-------TGKTAAFALTMLSRVDASVPKPQAICLAPS 198
Query: 116 -EVPTLIKDHNKDIIKKIPFAYARMTF---------------ATPYPKVKDHPKFDPLKI 159
E+ I D ++ K A TP V D K L
Sbjct: 199 RELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPG-TVMDLMKRRQLDA 257
Query: 160 FSEGKIESSSQMLMDTIHNVDSFEVTTQKINFPTDITRIQLDHTAQ-DEEIKNAIMNQFF 218
I+ D + + + +I + +A E ++ +F
Sbjct: 258 R---DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEK-YAERF- 312
Query: 219 LLHN 222
N
Sbjct: 313 -APN 315
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein,
oxidoreductase; HET: HEM; 2.40A {Cupriavidus
metallidurans} (A:43-281)
Length = 239
Score = 26.8 bits (59), Expect = 9.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 404 VKLIMRTLASSVNLQEHLKPTDFLE 428
V IM L + N+ + P ++
Sbjct: 48 VSRIMDQLVQAWNVLATMTPPEYSA 72
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP;
2.20A {Escherichia coli} (A:1-128,A:240-273)
Length = 162
Score = 26.5 bits (58), Expect = 10.0
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 112 KIIIEVPTLIKDHNKDII-----KKIPFAYARMTFA 142
++I + + I I FA RMTFA
Sbjct: 98 GMVIGTTGFDEAGKQAIRDAAADIAIVFAANRMTFA 133
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,929,302
Number of extensions: 230479
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 26
Length of query: 652
Length of database: 4,956,049
Length adjustment: 94
Effective length of query: 558
Effective length of database: 1,778,379
Effective search space: 992335482
Effective search space used: 992335482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)