BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] (652 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/652 (100%), Positives = 652/652 (100%) Query: 1 MTLCTISNKRDILFSFGDTPPILGNNDAKIFLDNRRKVSLRWLSTTFFAGITSGVIIGGS 60 MTLCTISNKRDILFSFGDTPPILGNNDAKIFLDNRRKVSLRWLSTTFFAGITSGVIIGGS Sbjct: 1 MTLCTISNKRDILFSFGDTPPILGNNDAKIFLDNRRKVSLRWLSTTFFAGITSGVIIGGS 60 Query: 61 LLTALDGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARLSPKTKSKHPEKIIIEVPTL 120 LLTALDGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARLSPKTKSKHPEKIIIEVPTL Sbjct: 61 LLTALDGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARLSPKTKSKHPEKIIIEVPTL 120 Query: 121 IKDHNKDIIKKIPFAYARMTFATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVD 180 IKDHNKDIIKKIPFAYARMTFATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVD Sbjct: 121 IKDHNKDIIKKIPFAYARMTFATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVD 180 Query: 181 SFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLLHNKKNQSFTLYYADPQTLDQ 240 SFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLLHNKKNQSFTLYYADPQTLDQ Sbjct: 181 SFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLLHNKKNQSFTLYYADPQTLDQ 240 Query: 241 RHDHPITYSKKIKIIEENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGD 300 RHDHPITYSKKIKIIEENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGD Sbjct: 241 RHDHPITYSKKIKIIEENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGD 300 Query: 301 SAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALNDNNEYV 360 SAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALNDNNEYV Sbjct: 301 SAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALNDNNEYV 360 Query: 361 LGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEH 420 LGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEH Sbjct: 361 LGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEH 420 Query: 421 LKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKS 480 LKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKS Sbjct: 421 LKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKS 480 Query: 481 SRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA 540 SRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA Sbjct: 481 SRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA 540 Query: 541 GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI 600 GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI Sbjct: 541 GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI 600 Query: 601 VNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNNGENPKKPLFTSH 652 VNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNNGENPKKPLFTSH Sbjct: 601 VNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNNGENPKKPLFTSH 652 >gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62] Length = 84 Score = 42.0 bits (97), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 526 IVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIG 585 ++ VG+ +VE G LI H + V+ Y+H D ++ G V +G IG G Sbjct: 2 VIYVGNDLVE-------LGNTILIRHDDSIVTVYSHID--TPYVQKGQKVSRGHTIGLSG 52 Query: 586 TTGLSTGPHLHYELIVNGIKVDSTK 610 +G + P +H+EL N I +D K Sbjct: 53 KSGNAQHPQVHFELRKNAIAMDPIK 77 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 32.0 bits (71), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 422 KPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVD--GSVEY-FNENG 478 K + L+TF + ++++ S+ ++ I+ G+ R+ RF+ ++ G++ Y Sbjct: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234 Query: 479 KSSRPFLLRTPVPFGRMTSGFGMR---YHPILGYSRMH 513 +S P ++ PF G R YH ++ Y + Sbjct: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQ 272 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 28.1 bits (61), Expect = 0.48, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 449 IHARFGETRTRFYRFLNPVDGSVEYFNENGKSSRPFL 485 I RF + FYR +PVDGS + E+ K+ FL Sbjct: 612 IKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFL 648 >gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus str. psy62] Length = 297 Score = 25.4 bits (54), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 265 QVLIDKIPEFA---DDLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDE 321 Q+L++ I + +D I + D + AGY AK A A + ++R+D + Sbjct: 222 QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEA 281 Query: 322 ILRIGVVQKDD 332 +L I +KD+ Sbjct: 282 LLYIQGYKKDE 292 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 23.9 bits (50), Expect = 8.7, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 558 SYNHQDAIAKNIKAGTA-VKQGQIIGWIGTTGLSTGPHLHYEL--IVNG-IKVDSTKVRI 613 SYNH + I K I A K+ +IG G G ST L Y L I G I +D ++ Sbjct: 365 SYNHHNCIFKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423 Query: 614 PERENLK 620 +E+L+ Sbjct: 424 ITKESLR 430 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 23.9 bits (50), Expect = 9.8, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 34/117 (29%) Query: 521 PRGTPIVAVGDGIVEKANWAGGYG-KQTLIHHGNGYVSSYN------------------- 560 P+ T I+ G VE A G K TL+ GN +S ++ Sbjct: 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVF 227 Query: 561 HQDAIAKNI----------KAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVD 607 H D I + K+G VK Q+I +G T +TG L G+K+D Sbjct: 228 HNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKV----GVKMD 280 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.394 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 435,248 Number of Sequences: 1233 Number of extensions: 19134 Number of successful extensions: 48 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 12 length of query: 652 length of database: 328,796 effective HSP length: 80 effective length of query: 572 effective length of database: 230,156 effective search space: 131649232 effective search space used: 131649232 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)