Query         gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 40
No_of_seqs    16 out of 18
Neff          1.7 
Searched_HMMs 33803
Date          Wed Jun  1 18:00:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780880.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ii1_A Cellulase; CELM2, gluc  17.1      29 0.00087   17.5  -0.2   21    8-28     36-56  (189)
  2 >2w3q_A Carbonic anhydrase 2;    7.9      96  0.0028   15.2   0.0   12   16-27      4-15  (63)
  3 >2h85_A Putative ORF1AB polypr   5.9 1.4E+02  0.0041   14.5  -0.0   12   11-22     13-24  (34)
  4 >1o17_A Anthranilate PRT, anth   4.3 2.3E+02  0.0067   13.5   0.2   21   16-36     68-88  (95)
  5 >2o2k_A Methionine synthase; C   3.6 3.5E+02    0.01   12.6   0.7   18    7-24      9-26  (74)
  6 >1pxv_A Cysteine protease; hyd   3.4 2.9E+02  0.0085   13.0   0.0   14   12-25    145-158 (183)
  7 >1lox_A 15-lipoxygenase, 15LOX   3.3 2.7E+02  0.0079   13.2  -0.2   17    6-22     14-30  (336)
  8 >1qxp_A MU-like calpain; M-cal   2.8 3.9E+02   0.011   12.4   0.2   13    8-20    109-121 (141)
  9 >3bow_A Calpain-2 catalytic su   2.7 3.2E+02  0.0095   12.8  -0.3   13    8-20    108-120 (140)
 10 >1lwu_B Fibrinogen beta chain;   2.7 2.4E+02  0.0072   13.3  -0.9   23   12-34    232-256 (258)

No 1  
>>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A (A:36-42,A:251-432)
Probab=17.06  E-value=29  Score=17.55  Aligned_cols=21  Identities=14%  Similarity=0.438  Sum_probs=17.4

Q ss_pred             HHHHCCCCCCCCCCHHHHHHH
Q ss_conf             122113111342000122223
Q gi|254780880|r    8 NQARKGIWWMPWHAQAMKDVI   28 (40)
Q Consensus         8 ~Qa~Kg~wWMPw~~eaMKDV~   28 (40)
                      -++.++.||+||-++-||.-.
T Consensus        36 ~~~~~~~~~l~~yLdqm~~a~   56 (189)
T 3ii1_A           36 RNNHGGWDYLPWLLDQLRQNN   56 (189)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHH
T ss_pred             HCCCCCCCHHHHHHHHHHHHH
T ss_conf             103786550078888766541


No 2  
>>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A (A:1-63)
Probab=7.95  E-value=96  Score=15.20  Aligned_cols=12  Identities=42%  Similarity=0.747  Sum_probs=9.3

Q ss_pred             CCCCCCHHHHHH
Q ss_conf             134200012222
Q gi|254780880|r   16 WMPWHAQAMKDV   27 (40)
Q Consensus        16 WMPw~~eaMKDV   27 (40)
                      -||.|.||.|--
T Consensus         4 smpfhaeplkps   15 (63)
T 2w3q_A            4 SMPFHAEPLKPS   15 (63)
T ss_dssp             SCTTCCCCCCHH
T ss_pred             CCCCCCCCCCCC
T ss_conf             675425689998


No 3  
>>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral protein; 2.60A {Sars coronavirus} (A:314-347)
Probab=5.90  E-value=1.4e+02  Score=14.48  Aligned_cols=12  Identities=25%  Similarity=0.465  Sum_probs=9.2

Q ss_pred             HCCCCCCCCCCH
Q ss_conf             113111342000
Q gi|254780880|r   11 RKGIWWMPWHAQ   22 (40)
Q Consensus        11 ~Kg~wWMPw~~e   22 (40)
                      .|-.+||-|+-.
T Consensus        13 ~k~~~~MLWCkd   24 (34)
T 2h85_A           13 YAEISFMLWCKD   24 (34)
T ss_dssp             TEEEEEEEEEET
T ss_pred             CCEEEEEEEECC
T ss_conf             733899999537


No 4  
>>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} (A:1-74,A:156-176)
Probab=4.28  E-value=2.3e+02  Score=13.51  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=16.7

Q ss_pred             CCCCCCHHHHHHHHCCCCCCC
Q ss_conf             134200012222311333664
Q gi|254780880|r   16 WMPWHAQAMKDVICCDKLWGA   36 (40)
Q Consensus        16 WMPw~~eaMKDV~~CdK~rGa   36 (40)
                      =.||...+||.|....|.-|.
T Consensus        68 ~i~~~~~~~~~~~~~~~~~~~   88 (95)
T 1o17_A           68 KIDVPNAAMKNVANVRKTLGI   88 (95)
T ss_dssp             CCCCTTCGGGGTHHHHHHHCS
T ss_pred             CCCCCCCHHHHHHHHHHHHCC
T ss_conf             788555687741335565176


No 5  
>>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens} (A:1-24,A:306-355)
Probab=3.64  E-value=3.5e+02  Score=12.62  Aligned_cols=18  Identities=39%  Similarity=0.580  Sum_probs=15.5

Q ss_pred             CHHHHCCCCCCCCCCHHH
Q ss_conf             112211311134200012
Q gi|254780880|r    7 SNQARKGIWWMPWHAQAM   24 (40)
Q Consensus         7 ~~Qa~Kg~wWMPw~~eaM   24 (40)
                      -|||.|+-.-|-|-.|+.
T Consensus         9 ~~~~~~~~~~~~~~~~aV   26 (74)
T 2o2k_A            9 LSQARKSGFQMDWLSEAV   26 (74)
T ss_dssp             HHHHHHTBCCCCGGGCCC
T ss_pred             HHHHHHCCCCCCCCCCCC
T ss_conf             999985588888766815


No 6  
>>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} (A:)
Probab=3.36  E-value=2.9e+02  Score=13.02  Aligned_cols=14  Identities=36%  Similarity=0.921  Sum_probs=10.2

Q ss_pred             CCCCCCCCCCHHHH
Q ss_conf             13111342000122
Q gi|254780880|r   12 KGIWWMPWHAQAMK   25 (40)
Q Consensus        12 Kg~wWMPw~~eaMK   25 (40)
                      +-+-|.||..++|-
T Consensus       145 ~y~iWNPW~~~~~~  158 (183)
T 1pxv_A          145 KLIYWNPWDTELSI  158 (183)
T ss_dssp             EEEEECTTCSSCEE
T ss_pred             EEEEECCCCCCCEE
T ss_conf             89997798885467


No 7  
>>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} (A:118-152,A:362-662)
Probab=3.29  E-value=2.7e+02  Score=13.16  Aligned_cols=17  Identities=29%  Similarity=0.560  Sum_probs=11.7

Q ss_pred             CCHHHHCCCCCCCCCCH
Q ss_conf             21122113111342000
Q gi|254780880|r    6 ESNQARKGIWWMPWHAQ   22 (40)
Q Consensus         6 ~~~Qa~Kg~wWMPw~~e   22 (40)
                      |-.+-.|-++||-|+--
T Consensus        14 ~~~~~~~~~~~~~~~~~   30 (336)
T 1lox_A           14 ELEERRKLYQWGSWKEG   30 (336)
T ss_dssp             HHHHHHHHSCEECSSTT
T ss_pred             HHHHHHHHCCCCCCCCC
T ss_conf             99998843327887999


No 8  
>>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} (A:209-349)
Probab=2.82  E-value=3.9e+02  Score=12.44  Aligned_cols=13  Identities=23%  Similarity=0.772  Sum_probs=9.0

Q ss_pred             HHHHCCCCCCCCC
Q ss_conf             1221131113420
Q gi|254780880|r    8 NQARKGIWWMPWH   20 (40)
Q Consensus         8 ~Qa~Kg~wWMPw~   20 (40)
                      .+..-|+.||+|.
T Consensus       109 ~~~ddG~FWM~~~  121 (141)
T 1qxp_A          109 VKMEDGEFWMSFR  121 (141)
T ss_dssp             CCCCSSCCCCBST
T ss_pred             CCCCCCEEEEEHH
T ss_conf             8889988985879


No 9  
>>3bow_A Calpain-2 catalytic subunit; cysteine protease, calcium, inhibitor, cell membrane, cytoplasm, hydrolase, membrane, protease, thiol protease; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L (A:210-349)
Probab=2.69  E-value=3.2e+02  Score=12.79  Aligned_cols=13  Identities=23%  Similarity=0.843  Sum_probs=8.8

Q ss_pred             HHHHCCCCCCCCC
Q ss_conf             1221131113420
Q gi|254780880|r    8 NQARKGIWWMPWH   20 (40)
Q Consensus         8 ~Qa~Kg~wWMPw~   20 (40)
                      .+..-|+.||+|.
T Consensus       108 ~~~~dG~FWM~~~  120 (140)
T 3bow_A          108 ERQEDGEFWMSFS  120 (140)
T ss_dssp             CCCCSSEEEEEHH
T ss_pred             CCCCCCEEEEEHH
T ss_conf             7888976998979


No 10 
>>1lwu_B Fibrinogen beta chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} (B:66-323)
Probab=2.69  E-value=2.4e+02  Score=13.35  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=0.0

Q ss_pred             CCCCCCCCC--CHHHHHHHHCCCCC
Q ss_conf             131113420--00122223113336
Q gi|254780880|r   12 KGIWWMPWH--AQAMKDVICCDKLW   34 (40)
Q Consensus        12 Kg~wWMPw~--~eaMKDV~~CdK~r   34 (40)
                      +||.|+.|+  ..++|-|..--+|+
T Consensus       232 ~gi~W~~~~~~~~~lk~~~M~irp~  256 (258)
T 1lwu_B          232 DGVVWMNWKGSWYSMRQMAMKLRPK  256 (258)
T ss_dssp             CSSEEHHHHCTTBCCSEEEEEEECC
T ss_pred             CCEEECCCCCCCCCCCEEEEEEECC
T ss_conf             8138687789873323489987018


Done!