Query gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 40 No_of_seqs 16 out of 18 Neff 1.7 Searched_HMMs 33803 Date Wed Jun 1 18:00:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780880.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ii1_A Cellulase; CELM2, gluc 17.1 29 0.00087 17.5 -0.2 21 8-28 36-56 (189) 2 >2w3q_A Carbonic anhydrase 2; 7.9 96 0.0028 15.2 0.0 12 16-27 4-15 (63) 3 >2h85_A Putative ORF1AB polypr 5.9 1.4E+02 0.0041 14.5 -0.0 12 11-22 13-24 (34) 4 >1o17_A Anthranilate PRT, anth 4.3 2.3E+02 0.0067 13.5 0.2 21 16-36 68-88 (95) 5 >2o2k_A Methionine synthase; C 3.6 3.5E+02 0.01 12.6 0.7 18 7-24 9-26 (74) 6 >1pxv_A Cysteine protease; hyd 3.4 2.9E+02 0.0085 13.0 0.0 14 12-25 145-158 (183) 7 >1lox_A 15-lipoxygenase, 15LOX 3.3 2.7E+02 0.0079 13.2 -0.2 17 6-22 14-30 (336) 8 >1qxp_A MU-like calpain; M-cal 2.8 3.9E+02 0.011 12.4 0.2 13 8-20 109-121 (141) 9 >3bow_A Calpain-2 catalytic su 2.7 3.2E+02 0.0095 12.8 -0.3 13 8-20 108-120 (140) 10 >1lwu_B Fibrinogen beta chain; 2.7 2.4E+02 0.0072 13.3 -0.9 23 12-34 232-256 (258) No 1 >>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A (A:36-42,A:251-432) Probab=17.06 E-value=29 Score=17.55 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=17.4 Q ss_pred HHHHCCCCCCCCCCHHHHHHH Q ss_conf 122113111342000122223 Q gi|254780880|r 8 NQARKGIWWMPWHAQAMKDVI 28 (40) Q Consensus 8 ~Qa~Kg~wWMPw~~eaMKDV~ 28 (40) -++.++.||+||-++-||.-. T Consensus 36 ~~~~~~~~~l~~yLdqm~~a~ 56 (189) T 3ii1_A 36 RNNHGGWDYLPWLLDQLRQNN 56 (189) T ss_dssp HHHTTTCCHHHHHHHHHHHHH T ss_pred HCCCCCCCHHHHHHHHHHHHH T ss_conf 103786550078888766541 No 2 >>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A (A:1-63) Probab=7.95 E-value=96 Score=15.20 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.3 Q ss_pred CCCCCCHHHHHH Q ss_conf 134200012222 Q gi|254780880|r 16 WMPWHAQAMKDV 27 (40) Q Consensus 16 WMPw~~eaMKDV 27 (40) -||.|.||.|-- T Consensus 4 smpfhaeplkps 15 (63) T 2w3q_A 4 SMPFHAEPLKPS 15 (63) T ss_dssp SCTTCCCCCCHH T ss_pred CCCCCCCCCCCC T ss_conf 675425689998 No 3 >>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral protein; 2.60A {Sars coronavirus} (A:314-347) Probab=5.90 E-value=1.4e+02 Score=14.48 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.2 Q ss_pred HCCCCCCCCCCH Q ss_conf 113111342000 Q gi|254780880|r 11 RKGIWWMPWHAQ 22 (40) Q Consensus 11 ~Kg~wWMPw~~e 22 (40) .|-.+||-|+-. T Consensus 13 ~k~~~~MLWCkd 24 (34) T 2h85_A 13 YAEISFMLWCKD 24 (34) T ss_dssp TEEEEEEEEEET T ss_pred CCEEEEEEEECC T ss_conf 733899999537 No 4 >>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} (A:1-74,A:156-176) Probab=4.28 E-value=2.3e+02 Score=13.51 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.7 Q ss_pred CCCCCCHHHHHHHHCCCCCCC Q ss_conf 134200012222311333664 Q gi|254780880|r 16 WMPWHAQAMKDVICCDKLWGA 36 (40) Q Consensus 16 WMPw~~eaMKDV~~CdK~rGa 36 (40) =.||...+||.|....|.-|. T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~ 88 (95) T 1o17_A 68 KIDVPNAAMKNVANVRKTLGI 88 (95) T ss_dssp CCCCTTCGGGGTHHHHHHHCS T ss_pred CCCCCCCHHHHHHHHHHHHCC T ss_conf 788555687741335565176 No 5 >>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens} (A:1-24,A:306-355) Probab=3.64 E-value=3.5e+02 Score=12.62 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.5 Q ss_pred CHHHHCCCCCCCCCCHHH Q ss_conf 112211311134200012 Q gi|254780880|r 7 SNQARKGIWWMPWHAQAM 24 (40) Q Consensus 7 ~~Qa~Kg~wWMPw~~eaM 24 (40) -|||.|+-.-|-|-.|+. T Consensus 9 ~~~~~~~~~~~~~~~~aV 26 (74) T 2o2k_A 9 LSQARKSGFQMDWLSEAV 26 (74) T ss_dssp HHHHHHTBCCCCGGGCCC T ss_pred HHHHHHCCCCCCCCCCCC T ss_conf 999985588888766815 No 6 >>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} (A:) Probab=3.36 E-value=2.9e+02 Score=13.02 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=10.2 Q ss_pred CCCCCCCCCCHHHH Q ss_conf 13111342000122 Q gi|254780880|r 12 KGIWWMPWHAQAMK 25 (40) Q Consensus 12 Kg~wWMPw~~eaMK 25 (40) +-+-|.||..++|- T Consensus 145 ~y~iWNPW~~~~~~ 158 (183) T 1pxv_A 145 KLIYWNPWDTELSI 158 (183) T ss_dssp EEEEECTTCSSCEE T ss_pred EEEEECCCCCCCEE T ss_conf 89997798885467 No 7 >>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} (A:118-152,A:362-662) Probab=3.29 E-value=2.7e+02 Score=13.16 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=11.7 Q ss_pred CCHHHHCCCCCCCCCCH Q ss_conf 21122113111342000 Q gi|254780880|r 6 ESNQARKGIWWMPWHAQ 22 (40) Q Consensus 6 ~~~Qa~Kg~wWMPw~~e 22 (40) |-.+-.|-++||-|+-- T Consensus 14 ~~~~~~~~~~~~~~~~~ 30 (336) T 1lox_A 14 ELEERRKLYQWGSWKEG 30 (336) T ss_dssp HHHHHHHHSCEECSSTT T ss_pred HHHHHHHHCCCCCCCCC T ss_conf 99998843327887999 No 8 >>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} (A:209-349) Probab=2.82 E-value=3.9e+02 Score=12.44 Aligned_cols=13 Identities=23% Similarity=0.772 Sum_probs=9.0 Q ss_pred HHHHCCCCCCCCC Q ss_conf 1221131113420 Q gi|254780880|r 8 NQARKGIWWMPWH 20 (40) Q Consensus 8 ~Qa~Kg~wWMPw~ 20 (40) .+..-|+.||+|. T Consensus 109 ~~~ddG~FWM~~~ 121 (141) T 1qxp_A 109 VKMEDGEFWMSFR 121 (141) T ss_dssp CCCCSSCCCCBST T ss_pred CCCCCCEEEEEHH T ss_conf 8889988985879 No 9 >>3bow_A Calpain-2 catalytic subunit; cysteine protease, calcium, inhibitor, cell membrane, cytoplasm, hydrolase, membrane, protease, thiol protease; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L (A:210-349) Probab=2.69 E-value=3.2e+02 Score=12.79 Aligned_cols=13 Identities=23% Similarity=0.843 Sum_probs=8.8 Q ss_pred HHHHCCCCCCCCC Q ss_conf 1221131113420 Q gi|254780880|r 8 NQARKGIWWMPWH 20 (40) Q Consensus 8 ~Qa~Kg~wWMPw~ 20 (40) .+..-|+.||+|. T Consensus 108 ~~~~dG~FWM~~~ 120 (140) T 3bow_A 108 ERQEDGEFWMSFS 120 (140) T ss_dssp CCCCSSEEEEEHH T ss_pred CCCCCCEEEEEHH T ss_conf 7888976998979 No 10 >>1lwu_B Fibrinogen beta chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} (B:66-323) Probab=2.69 E-value=2.4e+02 Score=13.35 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=0.0 Q ss_pred CCCCCCCCC--CHHHHHHHHCCCCC Q ss_conf 131113420--00122223113336 Q gi|254780880|r 12 KGIWWMPWH--AQAMKDVICCDKLW 34 (40) Q Consensus 12 Kg~wWMPw~--~eaMKDV~~CdK~r 34 (40) +||.|+.|+ ..++|-|..--+|+ T Consensus 232 ~gi~W~~~~~~~~~lk~~~M~irp~ 256 (258) T 1lwu_B 232 DGVVWMNWKGSWYSMRQMAMKLRPK 256 (258) T ss_dssp CSSEEHHHHCTTBCCSEEEEEEECC T ss_pred CCEEECCCCCCCCCCCEEEEEEECC T ss_conf 8138687789873323489987018 Done!