Query         gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 40
No_of_seqs    16 out of 18
Neff          1.7 
Searched_HMMs 23785
Date          Tue May 31 22:26:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780880.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1lwu_C Fibrinogen gamma chain;  22.8      15 0.00062   18.2   0.0   27   10-36    283-311 (323)
  2 3ghg_C Fibrinogen gamma chain;   8.8      71   0.003   15.1   0.4   23   11-33    364-388 (411)
  3 3ghg_B Fibrinogen beta chain;    6.8      73  0.0031   15.1  -0.3   18   10-27    431-450 (461)
  4 1fzc_C Fibrin; blood coagulati   6.7      76  0.0032   15.0  -0.2   24   11-34    277-302 (319)
  5 3ira_A Conserved protein; meth   5.1 1.8E+02  0.0077   13.2   1.0   25    9-33     17-41  (173)
  6 2fib_A Fibrinogen; fibrinogen,   4.5 1.6E+02  0.0069   13.4   0.4   22   11-32    222-245 (269)
  7 1m1j_C Fibrinogen gamma chain;   4.3 1.7E+02  0.0073   13.3   0.4   24   10-33    363-388 (409)
  8 2yw8_A RUN and FYVE domain-con   4.2 1.6E+02  0.0066   13.5   0.1   32    5-38      2-33  (82)
  9 1m1j_B Fibrinogen beta chain;    3.7 1.5E+02  0.0064   13.6  -0.4   18   10-27    435-454 (464)
 10 1lwu_B Fibrinogen beta chain;    3.2 1.4E+02  0.0059   13.7  -0.9   19   11-29    296-316 (323)

No 1  
>1lwu_C Fibrinogen gamma chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.78  E-value=15  Score=18.21  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=19.5

Q ss_pred             HHCCCCCCCCC--CHHHHHHHHCCCCCCC
Q ss_conf             21131113420--0012222311333664
Q gi|254780880|r   10 ARKGIWWMPWH--AQAMKDVICCDKLWGA   36 (40)
Q Consensus        10 a~Kg~wWMPw~--~eaMKDV~~CdK~rGa   36 (40)
                      ..+||+|++|+  ..++|-|..--+|.|+
T Consensus       283 ~~~GI~W~~w~g~~ysLk~~~M~IRP~~~  311 (323)
T 1lwu_C          283 YDDGIIWATWHDRWYSLKMTTMKLLPMGR  311 (323)
T ss_dssp             CCCSSEEGGGSCTTCCCSEEEEEEEESSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEEEEEECCC
T ss_conf             89933975579965320579998710888


No 2  
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=8.77  E-value=71  Score=15.11  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=14.9

Q ss_pred             HCCCCCCCCCC--HHHHHHHHCCCC
Q ss_conf             11311134200--012222311333
Q gi|254780880|r   11 RKGIWWMPWHA--QAMKDVICCDKL   33 (40)
Q Consensus        11 ~Kg~wWMPw~~--eaMKDV~~CdK~   33 (40)
                      ..||+|++|+-  .++|-|..--+|
T Consensus       364 ~~gi~W~~w~~~~~~lk~~~M~irp  388 (411)
T 3ghg_C          364 DNGIIWATWKTRWYSMKKTTMKIIP  388 (411)
T ss_dssp             CCBSEETTTSCTTBCCSEEEEEEEE
T ss_pred             CCCEEECCCCCCCCCCCEEEEEECC
T ss_conf             9931877678965333058998640


No 3  
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=6.77  E-value=73  Score=15.06  Aligned_cols=18  Identities=28%  Similarity=0.913  Sum_probs=10.9

Q ss_pred             HHCCCCCCCCCC--HHHHHH
Q ss_conf             211311134200--012222
Q gi|254780880|r   10 ARKGIWWMPWHA--QAMKDV   27 (40)
Q Consensus        10 a~Kg~wWMPw~~--eaMKDV   27 (40)
                      ...||+|+.|+-  ..||-|
T Consensus       431 ~~~Gi~W~~w~g~~yslk~~  450 (461)
T 3ghg_B          431 TDDGVVWMNWKGSWYSMRKM  450 (461)
T ss_dssp             SCCSSBCHHHHCTTBCCSCE
T ss_pred             CCCCEEECCCCCCCCCCCEE
T ss_conf             89923867579987111348


No 4  
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* 1re4_C* 2ffd_C* ...
Probab=6.68  E-value=76  Score=14.96  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=15.2

Q ss_pred             HCCCCCCCCCC--HHHHHHHHCCCCC
Q ss_conf             11311134200--0122223113336
Q gi|254780880|r   11 RKGIWWMPWHA--QAMKDVICCDKLW   34 (40)
Q Consensus        11 ~Kg~wWMPw~~--eaMKDV~~CdK~r   34 (40)
                      .+||+|.+|+-  .++|-|..--+|+
T Consensus       277 ~~GI~W~~w~g~~ysLK~~~M~IRP~  302 (319)
T 1fzc_C          277 DNGIIWATWKTRWYSMKKTTMKIIPF  302 (319)
T ss_dssp             CCBSEETTTSCTTBCCSEEEEEEEET
T ss_pred             CCCEEECCCCCCCCCCEEEEEEECCC
T ss_conf             89339754798443325799987538


No 5  
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, PSI, MCSG, protein structure initiative; 2.10A {Methanosarcina mazei GO1}
Probab=5.10  E-value=1.8e+02  Score=13.21  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=18.7

Q ss_pred             HHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             2211311134200012222311333
Q gi|254780880|r    9 QARKGIWWMPWHAQAMKDVICCDKL   33 (40)
Q Consensus         9 Qa~Kg~wWMPw~~eaMKDV~~CdK~   33 (40)
                      .|.--+-|.||..||++--..-+||
T Consensus        17 ha~npV~W~~w~~eal~~Ak~~~Kp   41 (173)
T 3ira_A           17 HAYNPVDWYPWGEEAFEKARKENKP   41 (173)
T ss_dssp             TTTSSSCCBCSSHHHHHHHHHHTCC
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             7789947528889999999986991


No 6  
>2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization, complex (blood coagulation/peptide); 2.01A {Homo sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A 3fib_A
Probab=4.50  E-value=1.6e+02  Score=13.44  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=13.9

Q ss_pred             HCCCCCCCCCC--HHHHHHHHCCC
Q ss_conf             11311134200--01222231133
Q gi|254780880|r   11 RKGIWWMPWHA--QAMKDVICCDK   32 (40)
Q Consensus        11 ~Kg~wWMPw~~--eaMKDV~~CdK   32 (40)
                      .+||.|++|+-  ..+|-|..--.
T Consensus       222 ~~GI~W~~w~g~~yslK~~~M~IR  245 (269)
T 2fib_A          222 DNGIIWATWKTRWYSMKKTTMKII  245 (269)
T ss_dssp             CCSSEETTTSCTTBCCSEEEEEEE
T ss_pred             CCCCEECCCCCCCEEEEEEEEEEE
T ss_conf             882087526883220267999975


No 7  
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=4.28  E-value=1.7e+02  Score=13.32  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=14.2

Q ss_pred             HHCCCCCCCCC--CHHHHHHHHCCCC
Q ss_conf             21131113420--0012222311333
Q gi|254780880|r   10 ARKGIWWMPWH--AQAMKDVICCDKL   33 (40)
Q Consensus        10 a~Kg~wWMPw~--~eaMKDV~~CdK~   33 (40)
                      ...||+|++|+  ..++|-|..--.|
T Consensus       363 ~~~gi~W~~~~~~~~slk~~~M~irp  388 (409)
T 1m1j_C          363 YDNGIIWATWRDRWYSMKKTTMKIIP  388 (409)
T ss_dssp             CCCSSEETTTSCTTBCCSEEEEEEEE
T ss_pred             CCCCEEECCCCCCCCCCCEEEEEECC
T ss_conf             89922878789976443248998732


No 8  
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=4.21  E-value=1.6e+02  Score=13.53  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             CCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf             5211221131113420001222231133366434
Q gi|254780880|r    5 NESNQARKGIWWMPWHAQAMKDVICCDKLWGAAN   38 (40)
Q Consensus         5 ~~~~Qa~Kg~wWMPw~~eaMKDV~~CdK~rGa~n   38 (40)
                      ++-+|+.++..|+|-..-  +-=..|.++-+.-+
T Consensus         2 ~~~~~~~~~~~W~~d~~~--~~C~~C~~~F~~~~   33 (82)
T 2yw8_A            2 KEVNQALKGHAWLKDDEA--THCRQCEKEFSISR   33 (82)
T ss_dssp             -------------CCCCC--CBCTTTCCBCBTTB
T ss_pred             CHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCC
T ss_conf             022221378889897647--86926498141755


No 9  
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=3.65  E-value=1.5e+02  Score=13.59  Aligned_cols=18  Identities=39%  Similarity=0.938  Sum_probs=10.6

Q ss_pred             HHCCCCCCCCCC--HHHHHH
Q ss_conf             211311134200--012222
Q gi|254780880|r   10 ARKGIWWMPWHA--QAMKDV   27 (40)
Q Consensus        10 a~Kg~wWMPw~~--eaMKDV   27 (40)
                      ..+||+|+.|+-  ..+|-|
T Consensus       435 ~~~Gi~W~~~~g~~yslk~~  454 (464)
T 1m1j_B          435 TDDGIVWMNWKGSWYSMKKM  454 (464)
T ss_dssp             SCCBSEEHHHHCSSBCCSEE
T ss_pred             CCCCEEECCCCCCCCCCCEE
T ss_conf             89942868789986111258


No 10 
>1lwu_B Fibrinogen beta chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=3.16  E-value=1.4e+02  Score=13.73  Aligned_cols=19  Identities=26%  Similarity=0.760  Sum_probs=11.3

Q ss_pred             HCCCCCCCCC--CHHHHHHHH
Q ss_conf             1131113420--001222231
Q gi|254780880|r   11 RKGIWWMPWH--AQAMKDVIC   29 (40)
Q Consensus        11 ~Kg~wWMPw~--~eaMKDV~~   29 (40)
                      ..||+|.+|+  ...+|-|..
T Consensus       296 ~~GI~W~~w~g~~yslk~~~M  316 (323)
T 1lwu_B          296 DDGVVWMNWKGSWYSMRQMAM  316 (323)
T ss_dssp             CCSSEEHHHHCTTBCCSEEEE
T ss_pred             CCCEEECCCCCCCCCCCEEEE
T ss_conf             995397357998601234899


Done!