BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780880|ref|YP_003065293.1| hypothetical protein
CLIBASIA_03885 [Candidatus Liberibacter asiaticus str. psy62]
         (40 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780492|ref|YP_003064905.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254780830|ref|YP_003065243.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040169|gb|ACT56965.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040507|gb|ACT57303.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040557|gb|ACT57353.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 40

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40


>gi|297182451|gb|ADI18614.1| hypothetical protein [uncultured Rhodospirillales bacterium
          HF4000_24M03]
          Length = 60

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          +KGIWWMPW  +AMKDVI C+K  GAAN+H
Sbjct: 31 KKGIWWMPWRQEAMKDVIGCEKPRGAANRH 60


>gi|210623970|ref|ZP_03294136.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
          13275]
 gi|210153265|gb|EEA84271.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
          13275]
          Length = 49

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 22/33 (66%)

Query: 7  SNQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
          + Q  KG   MPWH + MKDVI CDKLWG A K
Sbjct: 16 TGQVIKGAGRMPWHREPMKDVISCDKLWGVARK 48


>gi|51557703|gb|AAU06491.1| putative salivary protein [Culicoides sonorensis]
          Length = 46

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 8  NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
           Q +K I WMPW ++AMKDV+ CDKL G   +
Sbjct: 1  GQVKKRIRWMPWQSEAMKDVVACDKLRGVGKQ 32


>gi|297184727|gb|ADI20838.1| hypothetical protein [uncultured alpha proteobacterium
          EF100_102A06]
          Length = 83

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 6  ESNQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
          E  + +KGIWWMPW  +AMKDV  C+K  GAA+K
Sbjct: 49 ELIKRQKGIWWMPWCQEAMKDVTRCEKPGGAASK 82


>gi|297180501|gb|ADI16715.1| hypothetical protein [uncultured gamma proteobacterium
          HF0010_05D02]
          Length = 77

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 12 KGIWWMPWHAQAMKDVICCDKLWGAANK 39
          K I WMPW ++AMKDV+ CDKL G   +
Sbjct: 3  KRIRWMPWQSEAMKDVVACDKLRGVGKQ 30


>gi|297182112|gb|ADI18285.1| hypothetical protein [uncultured Chromatiales bacterium
          HF0200_41F04]
          Length = 56

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 8  NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
           QA K +WWMP   +AMKDV+ C+K  GA NK
Sbjct: 24 GQANKRMWWMPRRQEAMKDVVVCEKPRGAGNK 55


>gi|297183883|gb|ADI20005.1| hypothetical protein [uncultured gamma proteobacterium
          EB000_65A11]
          Length = 57

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 8  NQARKGIWWMPWHAQAMKDVICCDKLWGA 36
           QA K IWWMP   +AMKDV+ C+KL G 
Sbjct: 6  GQANKRIWWMPRQLEAMKDVVVCEKLGGG 34


>gi|297182912|gb|ADI19062.1| hypothetical protein [uncultured delta proteobacterium
          HF0070_07E19]
          Length = 69

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 3  IDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAAN 38
          I+ +SN+  KG   MPW  +AMKDV  CDK  G AN
Sbjct: 34 IEKKSNE--KGTGRMPWLQEAMKDVASCDKPRGEAN 67


>gi|255325736|ref|ZP_05366831.1| putative salivary protein [Corynebacterium tuberculostearicum
          SK141]
 gi|255297202|gb|EET76524.1| putative salivary protein [Corynebacterium tuberculostearicum
          SK141]
          Length = 58

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 12 KGIWWMPWHAQAMKDVICCDKLWGAAN 38
          KG WWMPWHA+ MKDV  C K  G  N
Sbjct: 32 KGAWWMPWHAEPMKDVKGCVKPRGVVN 58


>gi|297182737|gb|ADI18892.1| hypothetical protein [uncultured delta proteobacterium
          HF0010_08B07]
          Length = 68

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 17 MPWHAQAMKDVICCDKLWGAANK 39
          MPWH +AMKDV  CDKL GA  +
Sbjct: 1  MPWHLEAMKDVGNCDKLRGAVTQ 23


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780492|ref|YP_003064905.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254780830|ref|YP_003065243.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040169|gb|ACT56965.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040507|gb|ACT57303.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040557|gb|ACT57353.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 40

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40


>gi|210623970|ref|ZP_03294136.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
          13275]
 gi|210153265|gb|EEA84271.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
          13275]
          Length = 49

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 22/33 (66%)

Query: 7  SNQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
          + Q  KG   MPWH + MKDVI CDKLWG A K
Sbjct: 16 TGQVIKGAGRMPWHREPMKDVISCDKLWGVARK 48


>gi|297182451|gb|ADI18614.1| hypothetical protein [uncultured Rhodospirillales bacterium
          HF4000_24M03]
          Length = 60

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          +KGIWWMPW  +AMKDVI C+K  GAAN+H
Sbjct: 31 KKGIWWMPWRQEAMKDVIGCEKPRGAANRH 60


>gi|297184727|gb|ADI20838.1| hypothetical protein [uncultured alpha proteobacterium
          EF100_102A06]
          Length = 83

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAANK 39
          +KGIWWMPW  +AMKDV  C+K  GAA+K
Sbjct: 54 QKGIWWMPWCQEAMKDVTRCEKPGGAASK 82


>gi|255325736|ref|ZP_05366831.1| putative salivary protein [Corynebacterium tuberculostearicum
          SK141]
 gi|255297202|gb|EET76524.1| putative salivary protein [Corynebacterium tuberculostearicum
          SK141]
          Length = 58

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAAN 38
           KG WWMPWHA+ MKDV  C K  G  N
Sbjct: 31 IKGAWWMPWHAEPMKDVKGCVKPRGVVN 58


>gi|297182112|gb|ADI18285.1| hypothetical protein [uncultured Chromatiales bacterium
          HF0200_41F04]
          Length = 56

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 8  NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
           QA K +WWMP   +AMKDV+ C+K  GA NK
Sbjct: 24 GQANKRMWWMPRRQEAMKDVVVCEKPRGAGNK 55


>gi|51557703|gb|AAU06491.1| putative salivary protein [Culicoides sonorensis]
          Length = 46

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 8  NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
           Q +K I WMPW ++AMKDV+ CDKL G   +
Sbjct: 1  GQVKKRIRWMPWQSEAMKDVVACDKLRGVGKQ 32


>gi|297182912|gb|ADI19062.1| hypothetical protein [uncultured delta proteobacterium
          HF0070_07E19]
          Length = 69

 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 6  ESNQARKGIWWMPWHAQAMKDVICCDKLWGAAN 38
          E     KG   MPW  +AMKDV  CDK  G AN
Sbjct: 35 EKKSNEKGTGRMPWLQEAMKDVASCDKPRGEAN 67


>gi|297180501|gb|ADI16715.1| hypothetical protein [uncultured gamma proteobacterium
          HF0010_05D02]
          Length = 77

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 12 KGIWWMPWHAQAMKDVICCDKLWGAANK 39
          K I WMPW ++AMKDV+ CDKL G   +
Sbjct: 3  KRIRWMPWQSEAMKDVVACDKLRGVGKQ 30


>gi|269968958|ref|ZP_06182898.1| hypothetical protein VMC_43280 [Vibrio alginolyticus 40B]
 gi|269826431|gb|EEZ80825.1| hypothetical protein VMC_43280 [Vibrio alginolyticus 40B]
          Length = 71

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 17 MPWHAQAMKDVICCDKLWGAANKH 40
          MPW ++AMKDV+ CDK    +  H
Sbjct: 1  MPWQSEAMKDVLTCDKPRLGSKNH 24


>gi|297183883|gb|ADI20005.1| hypothetical protein [uncultured gamma proteobacterium
          EB000_65A11]
          Length = 57

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 8  NQARKGIWWMPWHAQAMKDVICCDKLWG 35
           QA K IWWMP   +AMKDV+ C+KL G
Sbjct: 6  GQANKRIWWMPRQLEAMKDVVVCEKLGG 33


>gi|297182737|gb|ADI18892.1| hypothetical protein [uncultured delta proteobacterium
          HF0010_08B07]
          Length = 68

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 17 MPWHAQAMKDVICCDKLWGAANK 39
          MPWH +AMKDV  CDKL GA  +
Sbjct: 1  MPWHLEAMKDVGNCDKLRGAVTQ 23


>gi|297180674|gb|ADI16883.1| hypothetical protein [uncultured gamma proteobacterium
          HF0010_16J05]
          Length = 71

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 17 MPWHAQAMKDVICCDKLWGAANK 39
          MPW  +AMKDV+ CD   G   +
Sbjct: 1  MPWQLKAMKDVVACDMPRGVGKQ 23


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.133    0.459 

Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 751,410,531
Number of Sequences: 14124377
Number of extensions: 14854867
Number of successful extensions: 32541
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32516
Number of HSP's gapped (non-prelim): 25
length of query: 40
length of database: 4,842,793,630
effective HSP length: 14
effective length of query: 26
effective length of database: 4,645,052,352
effective search space: 120771361152
effective search space used: 120771361152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)