HHSEARCH alignment of GI: 254780881 and SCOP domain: d1uwda_

Alignment
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=99.79  E-value=1.5e-19  Score=128.41  Aligned_cols=91  Identities=21%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCC-CEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             6035899999984141879997623238701013369-879999996722220689999999999853985340699997
Q gi|254780881|r    2 NQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVH-NTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT   80 (101)
Q Consensus         2 s~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~-~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt   80 (101)
                      .++++++|+++|++|.||++++|||++|+|+++.+++ |.|.|.+++++++|+..+.|.+++++++.+++|+.+|.|.++
T Consensus         3 ~~vt~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~   82 (102)
T d1uwda_           3 KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT   82 (102)
T ss_dssp             SCCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             51599999999817889999926144362356775146642788864889996279999999999982899760899999


Q ss_pred             ECCCCCCCCCCC
Q ss_conf             078987321569
Q gi|254780881|r   81 ENKNPPQQRNNL   92 (101)
Q Consensus        81 ~~~~~~~~~~~~   92 (101)
                      ++++|...+..+
T Consensus        83 ~~p~W~~~~~s~   94 (102)
T d1uwda_          83 FDPPWTPERMSP   94 (102)
T ss_dssp             CSSCCCGGGSCH
T ss_pred             ECCCCCHHHCCH
T ss_conf             629999377789


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]