RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus
Liberibacter asiaticus str. psy62]
         (101 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.1 bits (70), Expect = 0.062
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 41/100 (41%)

Query: 1   MNQIL--KNQIVDSLKVLSIPGEKNNIVE---------MQRLSEI------------F-- 35
            N  L    Q+  SL    + G KN +V             L +             F  
Sbjct: 356 TNSHLPAGKQVEISL----VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411

Query: 36  ----IVHNTVYLSITVP-HTIAHQLQSLRSNAQQIIQNIP 70
                 +   +L +  P H+       L   +  I +++ 
Sbjct: 412 RKLKFSNR--FLPVASPFHS-----HLLVPASDLINKDLV 444



 Score = 28.0 bits (62), Expect = 0.56
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 12/53 (22%)

Query: 36 IVHNTVYLSITVP---HTIAHQLQ-----SLRSNAQQIIQNI-PTVKNAVVTL 79
          + H ++   + VP     IA QLQ      L    +    +  PT       L
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT---TPAEL 60



 Score = 27.2 bits (60), Expect = 0.87
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 7/56 (12%)

Query: 14  KVLSIPGEKNNIVE-MQRLSEIFIVHNTVYLSITVP--HTIAHQLQSLRSNAQQII 66
           ++++I G + N  +  + L +++      Y  +        A  L  L        
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSELIRTTLDAE 206


>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown
          function, PSI-2, protein structure initiative; 1.49A
          {Pseudomonas aeruginosa}
          Length = 122

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 29 QRLSEIFIVHNTVYLSITVPH----TIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80
          +R +E+ +  NTVY+   V       I  Q + +  N  +++Q++ + +  V+++ 
Sbjct: 9  KRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVR 64


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 25.7 bits (56), Expect = 2.7
 Identities = 1/17 (5%), Positives = 5/17 (29%)

Query: 48  PHTIAHQLQSLRSNAQQ 64
            H  +    ++     +
Sbjct: 204 SHMTSGWFLTVSDLMNK 220


>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
           analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
           1qan_A* 1qao_A* 1qaq_A* 2erc_A
          Length = 244

 Score = 23.9 bits (51), Expect = 10.0
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 70  PTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
           P V ++++ L   K+    ++      FV   
Sbjct: 167 PKVNSSLIRLNRKKSRISHKDKQKYNYFVMKW 198


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 740,284
Number of extensions: 26994
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 11
Length of query: 101
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 35
Effective length of database: 4,093,126
Effective search space: 143259410
Effective search space used: 143259410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)