BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus
Liberibacter asiaticus str. psy62]
         (101 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score =  201 bits (510), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
           MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1   MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60

Query: 61  NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
           NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61  NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101


>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score =  197 bits (501), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
           MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1   MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60

Query: 61  NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
           NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61  NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101


>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score =  197 bits (501), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
           MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1   MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60

Query: 61  NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
           NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61  NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 25.4 bits (54), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 55  LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85
           L ++ S ++++ + IP+++  VVT TEN  P
Sbjct: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419


>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 162

 Score = 22.3 bits (46), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44
          L V+ IP EKN I   + L+ I  + + + LS
Sbjct: 8  LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39


>gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 125

 Score = 21.6 bits (44), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 35 FIVHNTVYLSITVPHTIAHQLQS 57
          FI+   V  SIT+ ++I H+ + 
Sbjct: 7  FIILGVVLASITITYSIKHETEG 29


>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 673

 Score = 21.2 bits (43), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 48  PHTIAHQLQSLRSNAQQIIQN---IPT----VKNAVVTLTENKNPPQQRN 90
           PH I H L+ +    Q I+++   IPT    V+ A  T T   N  +++N
Sbjct: 576 PHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKN 625


>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 428

 Score = 20.8 bits (42), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 60 SNAQQIIQNIPTVKNAVVTLTENKNP 85
          ++ + I++ +PT KN++ TL +   P
Sbjct: 56 TDLKNILKVLPTNKNSIATLQKKYKP 81


>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 20.0 bits (40), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 5   LKNQIVDSLKVLSIPGEK 22
           L+  I+ +LK+L I GE+
Sbjct: 123 LEEVIIRTLKILGIVGER 140


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.129    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,815
Number of Sequences: 1233
Number of extensions: 2013
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 101
length of database: 328,796
effective HSP length: 61
effective length of query: 40
effective length of database: 253,583
effective search space: 10143320
effective search space used: 10143320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 32 (16.9 bits)