HHsearch alignment for GI: 254780882 and conserved domain: PRK00283
>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed.
Probab=100.00 E-value=0 Score=475.22 Aligned_cols=291 Identities=33% Similarity=0.478 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999862548899999999999999999851214788789689899999999999986121013321123444
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l 95 (328)
T Consensus 4 ~~i~~fl~~L~~erg~S~~Ti~~Y~~~l~~f~~~l~~~~------~~~~~it~~~i~~y~~~L~~~~~s~~Tin~~l~~l 77 (296)
T PRK00283 4 ALIEQFLDALWVERGLAENTLSSYRRDLELFAEWLAARG------LSLAEATRDDLQAFLAELAEGGYKATSSARRLSAL 77 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999999879079999999999999999998759------99477999999999999987799999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 22223332101232222222222222212111111101567877653101356775775320122210011233222221
Q gi|254780882|r 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 (328)
Q Consensus 96 r~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~ 175 (328)
T Consensus 78 r~~~~~a~~~~~i~~np~~~i~~~k~~~~~~~~lt~eei~~ll~~~~~-----~~~~~~Rd~ail~ll~~tGlR~~El~~ 152 (296)
T PRK00283 78 RRFFQFLLREGLREDDPTALLDSPKLPRRLPKTLSEAQVEALLDAPDI-----DTPLGLRDRAMLELLYATGLRVSELVG 152 (296)
T ss_pred HHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 974799987074334878636677888889741437899998732377-----865768999999999983876120217
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 1222223323220332378531000112210023432211100123-446655432111122111000123567899976
Q gi|254780882|r 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 (328)
Q Consensus 176 L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~-~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~ 254 (328)
T Consensus 153 L~~~di~~~~~~i~v~~Kg~K~R~vpl~~~~~~~l~~yl~~~r~~~~~~~~~~~lF~~~~g~~l~~~~~~~~~~~~~~~a 232 (296)
T PRK00283 153 LTLDDVSLRQGVVRVTGKGNKERLVPLGEEAVYAIERYLERGRPALLGGRSSDALFPSARGGQLTRQTFWHRIKHYAKRA 232 (296)
T ss_pred CCHHHCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 85999235779557717898036997088999999999998657751489997475428898467999999999999980
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
Q ss_conf 869-9988054179999999984899889999837888789799996198999999999999817300
Q gi|254780882|r 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 (328)
Q Consensus 255 gi~-~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~ 321 (328)
T Consensus 233 gi~~~~~tpH~lRHt~at~ll~~G~~l~~i~~~LGHssi~TT~~Y~h~~~~~l----~~~~~~~~p~~ 296 (296)
T PRK00283 233 GIDPKKLSPHVLRHAFATHLLNHGADLRVVQELLGHSDISTTQIYTHVATERL----KELHAQHHPRA 296 (296)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHH----HHHHHHHCCCC
T ss_conf 89999889987879999999987989999998828998899999886899999----99999868499