HHsearch alignment for GI: 254780882 and conserved domain: TIGR02224
>TIGR02224 recomb_XerC tyrosine recombinase XerC; InterPro: IPR011931 The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents XerC, which is closely related to the other chromosomal protein XerD (IPR011932 from INTERPRO). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. XerC and XerD interact with cell division protein FtsK .; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=100.00 E-value=0 Score=609.80 Aligned_cols=300 Identities=35% Similarity=0.565 Sum_probs=278.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 999999998625488999999999999999998512---14788789689899999999999986--1210133211234
Q gi|254780882|r 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTIRQLSYTEIRAFISKRRT--QKIGDRSLKRSLS 93 (328)
Q Consensus 19 e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~---~~~~~~~~~~~i~~~~i~~~l~~l~~--~~~s~~T~~~~ls 93 (328)
T Consensus 1 ~~fl~yL~~er~~S~hT~~aY~~DL~~f~~fl~~~~~~~~~~~-~~~~~~~~~~d~R~~la~l~~~~~g~s~rS~~R~LS 79 (313)
T TIGR02224 1 EAFLEYLRVERNYSPHTLRAYRRDLEAFLEFLEEHKQEEGGPL-LASLAEVTAADLRSFLAELHAKERGLSRRSLARKLS 79 (313)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 8678999988500089999999999999999999877520111-015762488999999999984657876768999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 44222233321012322222222222222121111111015678776531013567757753201222100112332222
Q gi|254780882|r 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 (328)
Q Consensus 94 ~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El 173 (328)
T Consensus 80 alRsFy~~L~~~~~~~~nPa~~~~~PK~~~~LP~~L~~~~~~~ll~~~~~~~~~~~~~~~~RDrA~lEllYssGlRvSEl 159 (313)
T TIGR02224 80 ALRSFYRFLLRRGLIDANPAAGVRAPKKPKKLPKFLSEDEMEALLDAPEEDAEDREDWLALRDRAILELLYSSGLRVSEL 159 (313)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987287402238872267544679988898999999601234666677789998999999998746899998
Q ss_pred CCCCCC-CCCCCC--CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCHHH
Q ss_conf 211222-223323--22033237853100011221002343221110012344665-----5432111122111000123
Q gi|254780882|r 174 LSLTPQ-NIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQR 245 (328)
Q Consensus 174 ~~L~~~-did~~~--~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~-----~~lF~~~~g~~ls~~~i~~ 245 (328)
T Consensus 160 ~~L~~~~D~d~~~~~~~vrV~GKG~KeR~VP~G~~A~~al~~YL~~~r~~~~~~~~~~~~~~~LF~~~~G~rL~~R~v~~ 239 (313)
T TIGR02224 160 VGLDLSEDLDLDFSLGLVRVRGKGNKERIVPFGSYARDALQAYLEERREPLLAKEPPAQDHDALFLNRRGGRLTPRGVRY 239 (313)
T ss_pred HCCCCCCCCCCHHCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 24771336473221476777414881353031489999999998644721145667777522300178887257778999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHC
Q ss_conf 567899976869998805417999999998489988999983788878979999619899999999999981730001
Q gi|254780882|r 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 (328)
Q Consensus 246 ~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~ 323 (328)
T Consensus 240 ~l~~~~~~~~l~~~~hPH~LRHSFATHLL~~gaDLRaVQELLGH~SLSTTQiYTHv~~~~L----~~~Y~~AHPRA~k 313 (313)
T TIGR02224 240 RLQQLVAKAGLPKHVHPHALRHSFATHLLENGADLRAVQELLGHASLSTTQIYTHVDFQHL----AKVYDKAHPRAKK 313 (313)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC
T ss_conf 9999998568888678753113179999746883558989744464356679888409999----9999973777779