HHsearch alignment for GI: 254780882 and conserved domain: TIGR02224

>TIGR02224 recomb_XerC tyrosine recombinase XerC; InterPro: IPR011931 The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents XerC, which is closely related to the other chromosomal protein XerD (IPR011932 from INTERPRO). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. XerC and XerD interact with cell division protein FtsK .; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=100.00  E-value=0  Score=609.80  Aligned_cols=300  Identities=35%  Similarity=0.565  Sum_probs=278.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             999999998625488999999999999999998512---14788789689899999999999986--1210133211234
Q gi|254780882|r   19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTIRQLSYTEIRAFISKRRT--QKIGDRSLKRSLS   93 (328)
Q Consensus        19 e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~---~~~~~~~~~~~i~~~~i~~~l~~l~~--~~~s~~T~~~~ls   93 (328)
T Consensus         1 ~~fl~yL~~er~~S~hT~~aY~~DL~~f~~fl~~~~~~~~~~~-~~~~~~~~~~d~R~~la~l~~~~~g~s~rS~~R~LS   79 (313)
T TIGR02224         1 EAFLEYLRVERNYSPHTLRAYRRDLEAFLEFLEEHKQEEGGPL-LASLAEVTAADLRSFLAELHAKERGLSRRSLARKLS   79 (313)
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             8678999988500089999999999999999999877520111-015762488999999999984657876768999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             44222233321012322222222222222121111111015678776531013567757753201222100112332222
Q gi|254780882|r   94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA  173 (328)
Q Consensus        94 ~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El  173 (328)
T Consensus        80 alRsFy~~L~~~~~~~~nPa~~~~~PK~~~~LP~~L~~~~~~~ll~~~~~~~~~~~~~~~~RDrA~lEllYssGlRvSEl  159 (313)
T TIGR02224        80 ALRSFYRFLLRRGLIDANPAAGVRAPKKPKKLPKFLSEDEMEALLDAPEEDAEDREDWLALRDRAILELLYSSGLRVSEL  159 (313)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999987287402238872267544679988898999999601234666677789998999999998746899998


Q ss_pred             CCCCCC-CCCCCC--CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCHHH
Q ss_conf             211222-223323--22033237853100011221002343221110012344665-----5432111122111000123
Q gi|254780882|r  174 LSLTPQ-NIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQR  245 (328)
Q Consensus       174 ~~L~~~-did~~~--~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~-----~~lF~~~~g~~ls~~~i~~  245 (328)
T Consensus       160 ~~L~~~~D~d~~~~~~~vrV~GKG~KeR~VP~G~~A~~al~~YL~~~r~~~~~~~~~~~~~~~LF~~~~G~rL~~R~v~~  239 (313)
T TIGR02224       160 VGLDLSEDLDLDFSLGLVRVRGKGNKERIVPFGSYARDALQAYLEERREPLLAKEPPAQDHDALFLNRRGGRLTPRGVRY  239 (313)
T ss_pred             HCCCCCCCCCCHHCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             24771336473221476777414881353031489999999998644721145667777522300178887257778999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHC
Q ss_conf             567899976869998805417999999998489988999983788878979999619899999999999981730001
Q gi|254780882|r  246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ  323 (328)
Q Consensus       246 ~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~  323 (328)
T Consensus       240 ~l~~~~~~~~l~~~~hPH~LRHSFATHLL~~gaDLRaVQELLGH~SLSTTQiYTHv~~~~L----~~~Y~~AHPRA~k  313 (313)
T TIGR02224       240 RLQQLVAKAGLPKHVHPHALRHSFATHLLENGADLRAVQELLGHASLSTTQIYTHVDFQHL----AKVYDKAHPRAKK  313 (313)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC
T ss_conf             9999998568888678753113179999746883558989744464356679888409999----9999973777779