HHsearch alignment for GI: 254780882 and conserved domain: cd00799
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.
Probab=100.00 E-value=0 Score=314.87 Aligned_cols=258 Identities=19% Similarity=0.199 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89999999999999999985121478878968989999999999998612101332112344422223332101232222
Q gi|254780882|r 33 KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 (328)
Q Consensus 33 ~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~i~~np 112 (328)
T Consensus 1 enT~~aY~~~l~~f~~wc~~~~~~-----~-~~~t~~~v~~yl~~L~-~~~~~~Ti~~~lsalr~~~~~~~~~~~~~~~~ 73 (287)
T cd00799 1 DNTRKAYLSDWRRFAAWCQAHGRT-----P-LPASPETVTLYLTDLA-DSLAPSTISRRLSALSQLHRRSGLPSPADSPL 73 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC-----C-CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 905999999999999999974999-----7-8899999999999998-47787699999999999999970588654714
Q ss_pred CCCC-C---CCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 2222-2---222-221211111110156787765310135677577532012221001123322222112222233232-
Q gi|254780882|r 113 ILNM-R---NLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186 (328)
Q Consensus 113 ~~~i-~---~~k-~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~- 186 (328)
T Consensus 74 ~~~~~~~~~r~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~~Rd~ail~ll~~tGlR~~El~~L~~~di~~~~~~ 149 (287)
T cd00799 74 VRLVLRGIRREEARPKRQALAILPEDLDKLRSLL----DESDTLRDLRDLALLLLGFAGLLRRSELVRLRWEDLTFTDGG 149 (287)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf 8887532112368876578989999999998625----557875879999999999986238999971839871857897
Q ss_pred C--EEE-CCCCCCC------CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHH
Q ss_conf 2--033-2378531------000112210023432211100123446655432111------122111000123567899
Q gi|254780882|r 187 T--LRI-QGKGDKI------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251 (328)
Q Consensus 187 ~--i~v-~gKg~K~------R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~------~g~~ls~~~i~~~~~~~~ 251 (328)
T Consensus 150 ~~~i~~~~~K~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~lF~~~~~~~~~~~~~ls~~~v~~~~~~~~ 224 (287)
T cd00799 150 GLLVTLRRSKTDQSGLGVLKLIPPLTTCPVRALERWLEAA-----RIPKGPLFRRIDRWGVLGPGALSDNSLNRILKRLA 224 (287)
T ss_pred EEEEEECCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1799955874035487836750621589999999999872-----56766430244446775788787899999999999
Q ss_pred HHCCCCC-CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHH
Q ss_conf 9768699-988054179999999984899889999837888789799996198999
Q gi|254780882|r 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 (328)
Q Consensus 252 ~~~gi~~-~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~ 306 (328)
T Consensus 225 ~~ag~~~~~~s~H~lRHt~At~ll~~G~~l~~Iq~~lGH~s~~tt~~Y~~~~d~~~ 280 (287)
T cd00799 225 EAAGLRSGSWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYIRDADRFQ 280 (287)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHC
T ss_conf 98599999989751389999999987999999999858999889999853713101