HHsearch alignment for GI: 254780882 and conserved domain: cd00801
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=100.00 E-value=2.8e-45 Score=302.48 Aligned_cols=275 Identities=17% Similarity=0.188 Sum_probs=214.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4989999999999999986254889999999999999-999985121478878968989999999999998612101332
Q gi|254780882|r 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 (328)
Q Consensus 10 ~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f-~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~ 88 (328)
T Consensus 69 ~~~T~~~~~e~~~~~~~--~~~~~~t~~~~~~~l~~~i~p~~--------g~~~l~~It~~~i~~~~~~l~~~-~~~~ta 137 (357)
T cd00801 69 AANTFAEVAEEWLAAKK--PRWSEKHARQWRRTLEKHVLPVL--------GKKPITEITARDLLDVLRRIEAR-GALETA 137 (357)
T ss_pred HHCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHHHHHC-CCHHHH
T ss_conf 45549999999999731--02476899999999997758987--------78748991889999999999856-989999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 112344422223332101232222222222222212--111111101567877653101356775775320122210011
Q gi|254780882|r 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 (328)
Q Consensus 89 ~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~--~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~T 166 (328)
T Consensus 138 ~~~~~~l~~~~~~A~~~~~i~~NP~~~i~~~~~~~~~~r~r~lt~ee~~~l~~~l~~~~~~-~-----~~~~~~~l~l~T 211 (357)
T cd00801 138 RRVRQRLKQVFRYAIARGLIEANPAADLRGADGAPKKQHDRALSPDELPEFLQALDAASGS-P-----VTRLALKLLLLT 211 (357)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-H-----HHHHHHHHHHHH
T ss_conf 9999999999999998277443657654441067887766678999999999999857788-3-----799999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEE---CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 233222221122222332322033---237853100011221002343221110012344665543211112--211100
Q gi|254780882|r 167 GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPG 241 (328)
Q Consensus 167 GlR~~El~~L~~~did~~~~~i~v---~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g--~~ls~~ 241 (328)
T Consensus 212 G~R~gE~~~L~w~diD~~~~~~~Ip~~~tK~~~~~~vPL~~~~~~~L~~~~~~------~~~~~~vF~~~~~~~~~~~~~ 285 (357)
T cd00801 212 GVRPGELRGARWSEIDLENALWTIPAERMKTRRPHRVPLSDQALALLEELREL------SGHSEYVFPSRRDRGKPLSEN 285 (357)
T ss_pred CCCHHHHHCCCHHHEECCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH------CCCCCEEECCCCCCCCCCCHH
T ss_conf 77888886387998777788489620236589936983989999999999886------499945825799999977489
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHHHC-HHHHHHHHH
Q ss_conf 0123567899976869998805417999999998489988999983788878979-999619-899999999
Q gi|254780882|r 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN-SKNGGDWMM 311 (328)
Q Consensus 242 ~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~-~Y~h~~-~~~~~~~l~ 311 (328)
T Consensus 286 ~~~~~~~----~~~~~~~~t~HdlRhT~aT~l~~~Gv~~~~i~~~LGH~~~~~t~~~Y~h~~y~~ekr~~l~ 353 (357)
T cd00801 286 TLNKALK----RMGYLGEWTPHGLRRTARTWLNELGFPPDVIERQLAHVLGGKVRAAYNRADYLEERREAMQ 353 (357)
T ss_pred HHHHHHH----HHCCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999----9659999503248899999999859899999998489999818999617448999999999