HHsearch alignment for GI: 254780882 and conserved domain: cd01183
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=100.00 E-value=5.5e-40 Score=269.10 Aligned_cols=172 Identities=29% Similarity=0.331 Sum_probs=142.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CEEE-CCCCCCCCCCCC
Q ss_conf 11110156787765310135677577532012221001123322222112222233232----2033-237853100011
Q gi|254780882|r 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRI-QGKGDKIRIVPL 202 (328)
Q Consensus 128 ~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~----~i~v-~gKg~K~R~Vpi 202 (328)
T Consensus 1 ~lt~~~~~~~~~~~~~-~p~~~~~~~~Rd~ail~ll~~tGlR~sEl~~L~~~Di~~~~~~~~~~l~i~~gKg~k~R~vpl 79 (196)
T cd01183 1 ALTEDQWAFVIDTVAS-LPAQDPEHAARLLFLLALLYSTGLRISELAAATGPDLEAFVQGGGWWLYVPVGKGGKERRVPV 79 (196)
T ss_pred CCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCHHCCCCCEEEEEEECCCCCEEEECC
T ss_conf 9799999999999985-777897076999999999999666299998398887023116786059988588985003018
Q ss_pred CCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHCC-------------CCCCCCCC
Q ss_conf 2210023432211100123--446655432111----1221110001235678999768-------------69998805
Q gi|254780882|r 203 LPSVRKAILEYYDLCPFDL--NLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLG-------------LPLSTTAH 263 (328)
Q Consensus 203 ~~~~~~~l~~yl~~~~~~~--~~~~~~~lF~~~----~g~~ls~~~i~~~~~~~~~~~g-------------i~~~~spH 263 (328)
T Consensus 80 ~~~~~~~L~~yl~~r~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~spH 159 (196)
T cd01183 80 SDELLAALARYRQARGLPPEPAAGEAVPLLGRHKSAGGGGGLSSAQLYRIVKRVFGAAADRLQADGFEEDAAQLRAASTH 159 (196)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
T ss_conf 89999999999998477655554667640103677766787519999999999999999997641217675103767883
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 4179999999984899889999837888789799996
Q gi|254780882|r 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 (328)
Q Consensus 264 ~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h 300 (328)
T Consensus 160 ~LRHt~At~ll~~G~~l~~Vq~~LGH~si~TT~~Y~H 196 (196)
T cd01183 160 WLRHTHASHDLAAGVPLEHVQDNLGHASIDTTSRYLH 196 (196)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCC
T ss_conf 2589999999987999999998808998678734339