HHsearch alignment for GI: 254780882 and conserved domain: cd01183

>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=100.00  E-value=5.5e-40  Score=269.10  Aligned_cols=172  Identities=29%  Similarity=0.331  Sum_probs=142.1

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CEEE-CCCCCCCCCCCC
Q ss_conf             11110156787765310135677577532012221001123322222112222233232----2033-237853100011
Q gi|254780882|r  128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRI-QGKGDKIRIVPL  202 (328)
Q Consensus       128 ~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~----~i~v-~gKg~K~R~Vpi  202 (328)
T Consensus         1 ~lt~~~~~~~~~~~~~-~p~~~~~~~~Rd~ail~ll~~tGlR~sEl~~L~~~Di~~~~~~~~~~l~i~~gKg~k~R~vpl   79 (196)
T cd01183           1 ALTEDQWAFVIDTVAS-LPAQDPEHAARLLFLLALLYSTGLRISELAAATGPDLEAFVQGGGWWLYVPVGKGGKERRVPV   79 (196)
T ss_pred             CCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCHHCCCCCEEEEEEECCCCCEEEECC
T ss_conf             9799999999999985-777897076999999999999666299998398887023116786059988588985003018


Q ss_pred             CCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHCC-------------CCCCCCCC
Q ss_conf             2210023432211100123--446655432111----1221110001235678999768-------------69998805
Q gi|254780882|r  203 LPSVRKAILEYYDLCPFDL--NLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLG-------------LPLSTTAH  263 (328)
Q Consensus       203 ~~~~~~~l~~yl~~~~~~~--~~~~~~~lF~~~----~g~~ls~~~i~~~~~~~~~~~g-------------i~~~~spH  263 (328)
T Consensus        80 ~~~~~~~L~~yl~~r~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~spH  159 (196)
T cd01183          80 SDELLAALARYRQARGLPPEPAAGEAVPLLGRHKSAGGGGGLSSAQLYRIVKRVFGAAADRLQADGFEEDAAQLRAASTH  159 (196)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
T ss_conf             89999999999998477655554667640103677766787519999999999999999997641217675103767883


Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             4179999999984899889999837888789799996
Q gi|254780882|r  264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN  300 (328)
Q Consensus       264 ~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h  300 (328)
T Consensus       160 ~LRHt~At~ll~~G~~l~~Vq~~LGH~si~TT~~Y~H  196 (196)
T cd01183         160 WLRHTHASHDLAAGVPLEHVQDNLGHASIDTTSRYLH  196 (196)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCC
T ss_conf             2589999999987999999998808998678734339