HHsearch alignment for GI: 254780882 and conserved domain: cd01190
>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.
Probab=100.00 E-value=0 Score=376.54 Aligned_cols=247 Identities=26% Similarity=0.374 Sum_probs=213.2
Q ss_pred CCHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8968989999999999998-6121013321123444222233321012322---22222222222212111111101567
Q gi|254780882|r 61 QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNEKQALT 136 (328)
Q Consensus 61 ~~~~~i~~~~i~~~l~~l~-~~~~s~~T~~~~ls~lr~f~~~~~~~~~i~~---np~~~i~~~k~~~~~p~~lt~~e~~~ 136 (328)
T Consensus 3 l~l~dI~~~~i~~y~~~L~~~rg~s~~Tin~~l~~L~~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~~eei~~ 82 (260)
T cd01190 3 LEIEDIDAPLILAFLDHLENDRGNSIRTRNARLAALHSFFRYAAREVPEHLPTIQRVLAIPMKRFKRPLVTYLTREEVQA 82 (260)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 87587999999999999998469999999999999999999999808401455371014887888999998899999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 87765310135677577532012221001123322222112222233232-20332378531000112210023432211
Q gi|254780882|r 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 (328)
Q Consensus 137 ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~-~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~ 215 (328)
T Consensus 83 ll~~~-----~~~~~~~~rd~~i~~ll~~tGlR~sEl~~L~~~did~~~~~~~~~~~K~~k~r~vpi~~~~~~~L~~~~~ 157 (260)
T cd01190 83 LLAAP-----DRRTWSGRRDRAMLLFLYNTGARVSEATGLKVDDLQLDPPAQVRLIGKGRKERTVPLWRSTAAALRAWLR 157 (260)
T ss_pred HHHCC-----CCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 98186-----6567303689999999999575589786286976178998089996899804135468999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 10012344665543211112211100012356789997686------999880541799999999848998899998378
Q gi|254780882|r 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 (328)
Q Consensus 216 ~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi------~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH 289 (328)
T Consensus 158 ~~~~---~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRHt~At~ll~~G~~l~~vq~~LGH 234 (260)
T cd01190 158 ERGL---HAEDEPLFVNRRGEPMTRFGVTYLLRKHAAKAAATAPTLATKRISPHVLRHTTAMHLLQSGVDIVVIALWLGH 234 (260)
T ss_pred HCCC---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 7544---6876615127899947868899999999999724164324677676713899999999879999999998689
Q ss_pred CCHHHHHHHHHHCHHHHHHHHHHHHHHHCC
Q ss_conf 887897999961989999999999998173
Q gi|254780882|r 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 (328)
Q Consensus 290 ~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~ 319 (328)
T Consensus 235 ~~i~tT~~Y~hv~~~~~----r~a~~k~~p 260 (260)
T cd01190 235 ASLETTNIYAEADLEMK----RRALAKATP 260 (260)
T ss_pred CCHHHHHHHHCCCHHHH----HHHHHHHCC
T ss_conf 98899999984799999----999998691