HHsearch alignment for GI: 254780882 and conserved domain: cd01192
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=100.00 E-value=1.9e-37 Score=253.30 Aligned_cols=167 Identities=23% Similarity=0.264 Sum_probs=143.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC---CCCCCCCCCCC
Q ss_conf 111111015678776531013567757753201222100112332222211222223323220332---37853100011
Q gi|254780882|r 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPL 202 (328)
Q Consensus 126 p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~---gKg~K~R~Vpi 202 (328)
T Consensus 4 ~r~Lt~eE~~~ll~~~~~---------~~--r~~i~l~~~TG~R~~El~~L~~~did~~~~~i~i~~~~~K~~~~r~vpl 72 (177)
T cd01192 4 VRWLTPEEAERLIAELPP---------HL--KPAVLFALNTGLRRSEILGLEWSQVDLDNRVAWVRPATSKGGRAIRVPL 72 (177)
T ss_pred CCCCCHHHHHHHHHHCCH---------HH--HHHHHHHHHHCCCHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCEEECCC
T ss_conf 789999999999982898---------79--9999999997834999983878666630111011445688885442613
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 22100234322111001234466554321111221110001235678999768699988054179999999984899889
Q gi|254780882|r 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 (328)
Q Consensus 203 ~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~ 282 (328)
T Consensus 73 ~~~~~~~l~~~~~~-------~~~~~vf~~~~~~~~~--~~~~~~~~~~~~agi~-~~~~H~lRHt~at~l~~~G~~~~~ 142 (177)
T cd01192 73 NDEALQVLKRQKAG-------AHKPWVFAGAGGDPRI--DSKTAWRQALQRAGIS-DFRWHDLRHTWASWLVQSGVPLYV 142 (177)
T ss_pred HHHHHHHHHHHHHC-------CCCCCEECCCCCCCCC--HHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf 09999999998723-------5775141158998510--1789999999973799-998688968899999996989999
Q ss_pred HHHHHCCCCHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 9998378887897999961989999999999
Q gi|254780882|r 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 (328)
Q Consensus 283 v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~ 313 (328)
T Consensus 143 i~~~lGH~~~~~T~~Y~h~~~~~~r~a~~~l 173 (177)
T cd01192 143 LQELLGHSSLQMVRRYAHLSPEHLRAAARAL 173 (177)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999589989999998866999999999998