HHsearch alignment for GI: 254780882 and conserved domain: cd01192

>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=100.00  E-value=1.9e-37  Score=253.30  Aligned_cols=167  Identities=23%  Similarity=0.264  Sum_probs=143.8

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC---CCCCCCCCCCC
Q ss_conf             111111015678776531013567757753201222100112332222211222223323220332---37853100011
Q gi|254780882|r  126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPL  202 (328)
Q Consensus       126 p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~---gKg~K~R~Vpi  202 (328)
T Consensus         4 ~r~Lt~eE~~~ll~~~~~---------~~--r~~i~l~~~TG~R~~El~~L~~~did~~~~~i~i~~~~~K~~~~r~vpl   72 (177)
T cd01192           4 VRWLTPEEAERLIAELPP---------HL--KPAVLFALNTGLRRSEILGLEWSQVDLDNRVAWVRPATSKGGRAIRVPL   72 (177)
T ss_pred             CCCCCHHHHHHHHHHCCH---------HH--HHHHHHHHHHCCCHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCEEECCC
T ss_conf             789999999999982898---------79--9999999997834999983878666630111011445688885442613


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             22100234322111001234466554321111221110001235678999768699988054179999999984899889
Q gi|254780882|r  203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS  282 (328)
Q Consensus       203 ~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~  282 (328)
T Consensus        73 ~~~~~~~l~~~~~~-------~~~~~vf~~~~~~~~~--~~~~~~~~~~~~agi~-~~~~H~lRHt~at~l~~~G~~~~~  142 (177)
T cd01192          73 NDEALQVLKRQKAG-------AHKPWVFAGAGGDPRI--DSKTAWRQALQRAGIS-DFRWHDLRHTWASWLVQSGVPLYV  142 (177)
T ss_pred             HHHHHHHHHHHHHC-------CCCCCEECCCCCCCCC--HHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf             09999999998723-------5775141158998510--1789999999973799-998688968899999996989999


Q ss_pred             HHHHHCCCCHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             9998378887897999961989999999999
Q gi|254780882|r  283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEI  313 (328)
Q Consensus       283 v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~  313 (328)
T Consensus       143 i~~~lGH~~~~~T~~Y~h~~~~~~r~a~~~l  173 (177)
T cd01192         143 LQELLGHSSLQMVRRYAHLSPEHLRAAARAL  173 (177)
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999589989999998866999999999998