HHsearch alignment for GI: 254780882 and conserved domain: cd01193
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.
Probab=100.00 E-value=0 Score=358.12 Aligned_cols=229 Identities=33% Similarity=0.478 Sum_probs=203.8
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 78968989999999999998612-10133211234442222333210123222222222222221211111110156787
Q gi|254780882|r 60 IQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 (328)
Q Consensus 60 ~~~~~~i~~~~i~~~l~~l~~~~-~s~~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll 138 (328)
T Consensus 4 ~k~~~~it~~dI~~y~~~L~~~~~~s~~Tin~~l~~l~~~~~~~~~~~~---~~~~~~~~~k~~~~~~~~lt~eEi~~ll 80 (242)
T cd01193 4 GRSPDELGEEDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTLKRDL---PWLQRIRRPRKPRKLPVVLSPEEVRRLL 80 (242)
T ss_pred CCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9895889999999999999984898999999999999999999987689---6566565578999899889999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7653101356775775320122210011233222221122222332322033-237853100011221002343221110
Q gi|254780882|r 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 (328)
Q Consensus 139 ~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~ 217 (328)
T Consensus 81 ~~~~----------~~r~~~~~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~k~R~vpl~~~~~~~l~~~l~~~ 150 (242)
T cd01193 81 GALT----------GLKHRLILSLLYGCGLRLSECLRLRVKDIDFDRGQIRVRQGKGGKDRYVMLPEALLELLRAYWKRA 150 (242)
T ss_pred HCCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 7387----------767999999999828988889878663167675179986188996058875999999999999984
Q ss_pred CCCCCCCCCCCCCCCCCC--------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 012344665543211112--------211100012356789997686999880541799999999848998899998378
Q gi|254780882|r 218 PFDLNLNIQLPLFRGIRG--------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 (328)
Q Consensus 218 ~~~~~~~~~~~lF~~~~g--------~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH 289 (328)
T Consensus 151 ~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~H~lRHT~at~ll~~G~~l~~v~~~lGH 230 (242)
T cd01193 151 RALGRERPWQWLFPSTRRSRDPVERRHHLSERTLQRALKKAVEQAGIDKRVTPHTLRHSFATHLLEAGYDIRTIQELLGH 230 (242)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 65300365210135667775755367767599999999999998499999886748999999999879999999988399
Q ss_pred CCHHHHHHHHHH
Q ss_conf 887897999961
Q gi|254780882|r 290 FRLSTTQIYTNV 301 (328)
Q Consensus 290 ~s~~tT~~Y~h~ 301 (328)
T Consensus 231 ~si~tT~~Y~Hv 242 (242)
T cd01193 231 SDLKTTMIYTHV 242 (242)
T ss_pred CCHHHHHHHHCC
T ss_conf 888899870583