HHsearch alignment for GI: 254780882 and conserved domain: cd01193
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.
Probab=95.61 E-value=0.034 Score=32.98 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=47.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCCHHHCCHHHHHHHHH
Q ss_conf 304314989999999999999986254889999999999999999985121478--------878968989999999999
Q gi|254780882|r 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--------TIQTIRQLSYTEIRAFIS 76 (328)
Q Consensus 5 ~~~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~--------~~~~~~~i~~~~i~~~l~ 76 (328)
T Consensus 5 k~~~~it~---~dI~~y~~~L~~~~~~s~~Tin~~l~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~lt~eEi~~ll~ 81 (242)
T cd01193 5 RSPDELGE---EDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTLKRDLPWLQRIRRPRKPRKLPVVLSPEEVRRLLG 81 (242)
T ss_pred CCHHHCCH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 89588999---999999999998489899999999999999999998768965665655789998998899999999997
Q ss_pred HH
Q ss_conf 99
Q gi|254780882|r 77 KR 78 (328)
Q Consensus 77 ~l 78 (328)
T Consensus 82 ~~ 83 (242)
T cd01193 82 AL 83 (242)
T ss_pred CC
T ss_conf 38