HHsearch alignment for GI: 254780882 and conserved domain: cd01197
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=100.00 E-value=1.3e-43 Score=291.68 Aligned_cols=174 Identities=28% Similarity=0.375 Sum_probs=156.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332-37853100011221
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~-gKg~K~R~Vpi~~~ 205 (328)
T Consensus 3 ~~Lt~eEi~~ll~~~~~~------~~~~Rd~~i~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~~~~~~pl~~~ 76 (180)
T cd01197 3 KYLTPSEVRSLLKAALDG------RYSARDYCLMLLMFRHGLRVSEACGLKLSDIDLESRQIYIRRLKGGFSTTHPLRDD 76 (180)
T ss_pred CCCCHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECCCHH
T ss_conf 899999999999651507------64389999999999959529999518176561788848999704773036338289
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 (328)
Q Consensus 206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~ 285 (328)
T Consensus 77 ~~~~l~~~~~~~~~~-~~~~~~~lF~s~~g~~l~~~~i~~~~~~~~~~agl~~~~~~H~lRHt~At~l~~~G~~i~~Iq~ 155 (180)
T cd01197 77 ELEALKNWLEIRAWK-GLPDSDWIFLSRRGGPLSRQQVYKLIRRLGAQAGLSIKVHPHMLRHACGYALANQGADTRLIQD 155 (180)
T ss_pred HHHHHHHHHHHHHHC-CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999986620-4775411222688884218889999999999828876678987789999999987999999999
Q ss_pred HHCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8378887897999961989999
Q gi|254780882|r 286 ILGHFRLSTTQIYTNVNSKNGG 307 (328)
Q Consensus 286 ~lGH~s~~tT~~Y~h~~~~~~~ 307 (328)
T Consensus 156 ~LGH~~i~tT~~Yth~~~~~l~ 177 (180)
T cd01197 156 YLGHRNIRHTVIYTASNAARFL 177 (180)
T ss_pred HHCCCCHHHHHHHHHCCHHHHH
T ss_conf 8389987999999967999998