HHsearch alignment for GI: 254780882 and conserved domain: cd01198
>cd01198 INT_ASSRA_C Archaeal site-specific recombinase A (ASSRA), DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. Members of this CD are archael in origin. No biochemical characterization is available for the proteins of this subgroup at this point.
Probab=100.00 E-value=4.6e-44 Score=294.56 Aligned_cols=176 Identities=20% Similarity=0.209 Sum_probs=146.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCC
Q ss_conf 111101567877653101356775775320122210011233222221122222332322033237853-1000112210
Q gi|254780882|r 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-IRIVPLLPSV 206 (328)
Q Consensus 128 ~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K-~R~Vpi~~~~ 206 (328)
T Consensus 1 iLt~eev~~li~~~~----------~~rdraii~lL~~TGlRvsEl~~L~~~DId~~~~~i~V~~~~~k~~~~~~~~~~~ 70 (186)
T cd01198 1 LISVEAMRELIADIT----------HPLERAVIVGLAKTGIRRGELINLDRRDVNLDKPTLYLKPASNKRSNRTLFPDLE 70 (186)
T ss_pred CCCHHHHHHHHHCCC----------CHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEECCCCCCCCEEECCCHHH
T ss_conf 989999999998379----------8799999999999587999997792877686578788527889866055583899
Q ss_pred HHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-------CCCCCCCCHHHHHHHHHHCCC
Q ss_conf 023-432211100123446655432111122111000123567899976869-------998805417999999998489
Q gi|254780882|r 207 RKA-ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGG 278 (328)
Q Consensus 207 ~~~-l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~-------~~~spH~lRHtfAt~ll~~G~ 278 (328)
T Consensus 71 ~~~~~~~~~~~r----~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~vtPH~lRHtfAT~Ll~~G~ 146 (186)
T cd01198 71 TELFRWLAIRPR----TTSPADALFIGTQDGWGCRRLVYEMVTGMARRHGEHRPWGDLEENFTPHCFRHFFTTWLRRRGG 146 (186)
T ss_pred HHHHHHHHHHHH----HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999998775----3589982676179997768689999999999977643212114675851638999999998699
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
Q ss_conf 9889999837888789799996198999999999999817300
Q gi|254780882|r 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 (328)
Q Consensus 279 ~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~ 321 (328)
T Consensus 147 dl~~vq~lLGHssi~tT~~Y~h~~~~----~l~e~y~k~~Pr~ 185 (186)
T cd01198 147 DRGVVQELRGDSRDEAIDTYTHIWGD----ELREAYLKHIPSL 185 (186)
T ss_pred CHHHHHHHHCCCCHHHHHHHHCCCHH----HHHHHHHHHCCCC
T ss_conf 99999999489988999999847999----9999999858899