HHsearch alignment for GI: 254780882 and conserved domain: pfam01028
>pfam01028 Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core. Topoisomerase I promotes the relaxation of DNA superhelical tension by introducing a transient single-stranded break in duplex DNA and are vital for the processes of replication, transcription, and recombination.
Probab=96.88 E-value=0.0023 Score=40.35 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCC-CC--CCCCCCCHHHH
Q ss_conf 221122222332322033--237853100011221-0023432211100123446655432111-12--21110001235
Q gi|254780882|r 173 ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGI-RG--KPLNPGVFQRY 246 (328)
Q Consensus 173 l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi~~~-~~~~l~~yl~~~~~~~~~~~~~~lF~~~-~g--~~ls~~~i~~~ 246 (328)
T Consensus 84 ltTLr~~Hv~i~~~~i~~~F~GK~gv~~~~~v~d~~l~~~l~~l~-------~~~pg~~LF~y~~~g~~~~v~s~dvN~y 156 (244)
T pfam01028 84 LTTLRNRHVTLEGDVIRFDFLGKDGIRHENTVRDKRLAKNLKRLK-------QKLPGDELFQYLDDGERDRVSSSDLNAY 156 (244)
T ss_pred EEECCCCCEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHH-------HCCCCCHHEEEECCCCEEECCHHHHHHH
T ss_conf 010010447898998999987798747898868889999999998-------5299732168716996342788999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHH-----HHHCCCC--------------HHHHHHHHCCCCHHHH-HHHHH
Q ss_conf 67899976869998805417999999-----9984899--------------8899998378887897-99996
Q gi|254780882|r 247 IRQLRRYLGLPLSTTAHTLRHSFATH-----LLSNGGD--------------LRSIQSILGHFRLSTT-QIYTN 300 (328)
Q Consensus 247 ~~~~~~~~gi~~~~spH~lRHtfAt~-----ll~~G~~--------------~~~v~~~lGH~s~~tT-~~Y~h 300 (328)
T Consensus 157 Lk~~~---g--~~~TaKdFRTw~at~~a~~~L~~~~~~~~~~~~~k~~i~~a~~~vA~~LgnTp-aV~R~sYi~ 224 (244)
T pfam01028 157 LRELM---G--EGFTAKDFRTWNASVTALEALAELGKSLESVAEKKKAINAANKEVAILLGNTP-AVSRKSYIH 224 (244)
T ss_pred HHHHH---C--CCCCHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHCCC
T ss_conf 99983---5--88752122221207999999996589988999999999999999999858984-113774458