HHsearch alignment for GI: 254780882 and conserved domain: pfam11917
>pfam11917 DUF3435 Protein of unknown function (DUF3435). This family of proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to pfam00589 suggesting it may be an integrase enzyme.
Probab=97.78 E-value=3.8e-05 Score=51.45 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHH-HH
Q ss_conf 2211100012356789997686999880541799999999848-99889999837888789799-99
Q gi|254780882|r 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQI-YT 299 (328)
Q Consensus 235 g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G-~~~~~v~~~lGH~s~~tT~~-Y~ 299 (328)
T Consensus 170 ~~~lt~st~~~~lk~lgei~Gf~~~~~~y~~R~g~a~~~-n~~~vs~a~rn~im~Ha~~~tF~k~Y~ 235 (414)
T pfam11917 170 DQALTASTLNSWLKRLGEIAGFEDPLTPYCLRYGAAKAL-NSGEVSEAERNLILGHASSRTFLKHYL 235 (414)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHCCCCCCHHHHHCC
T ss_conf 778898999999999988841111454002357899852-665699899978744787405776256