HHsearch alignment of GI: 254780882 and MMDB domain: 1aih_A_1-49_87-170
>1aih_A (A:1-49,A:87-170) HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1}
Probab=99.87 E-value=5.8e-23 Score=162.34 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=101.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328)
+.|+.+|..+++.++.....+.-. .|+.|...||||.||+++|+|.-
T Consensus 5 ~~l~~~e~~~l~~~~~~~~~~~l~-------~~~~~~~~t~~r~~e~~~l~~~~-------------------------- 51 (133)
T 1aih_A 5 AFLYERDIYRLLAECDNSRNPDLG-------LIVRICLATGARWSEAETLTQLF-------------------------- 51 (133)
T ss_dssp CCCCHHHHHHHHHHHTTSSSTTHH-------HHHHHHHHHCCCHHHHHTCBTSS--------------------------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHHCCCHHHHHHHHHCC--------------------------
T ss_conf 689999999999986465896699-------99999999776466788764021--------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 023432211100123446655432111122111000123567899976869--998805417999999998489988999
Q gi|254780882|r 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQ 284 (328)
Q Consensus 207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~--~~~spH~lRHtfAt~ll~~G~~~~~v~ 284 (328)
+++++.|+++++++|++ .+++||+|||||||+|+++|+|+..||
T Consensus 52 ----------------------------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~~~Iq 97 (133)
T 1aih_A 52 ----------------------------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLK 97 (133)
T ss_dssp ----------------------------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHH
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf ----------------------------------1101244334567651258762002468877378774473098999
Q ss_pred HHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCC
Q ss_conf 9837888789799996198999999999999817300012
Q gi|254780882|r 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 (328)
Q Consensus 285 ~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~~ 324 (328)
++|||+|++||++|+|++.+...++ + +.+|+.++|
T Consensus 98 ~~lGH~s~~tT~~Y~~~~~~~~~~~----~-e~~~~~~~k 132 (133)
T 1aih_A 98 EILGHSTIEMTMRYAHFAPSHLESA----V-KFNPLSNPA 132 (133)
T ss_dssp HHHTCSSHHHHGGGGGGSCCCTTHH----H-HHSTTTSCC
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHH----H-HHCCCCCCC
T ss_conf 9808998899987766799999999----9-859565879