HHsearch alignment of GI: 254780882 and MMDB domain: 1z19_A_94-283
>1z19_A (A:94-283) Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=99.92 E-value=1.5e-26 Score=184.76 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 22222121111111015678776531013567757753201222100112332222211222223323220332378531
Q gi|254780882|r 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 118 ~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~ 197 (328)
.||.+++.+++|+.+|+.++++++.... .|+++++.|++.||||+||+++|+|+||++++..+.+.+++.+.
T Consensus 3 k~k~~~~~~~~lt~ee~~~l~~~~~~~~--------~~~~~~~~l~~~tG~R~~El~~l~~~di~~~~~~~~i~~~~~~~ 74 (190)
T 1z19_A 3 RAAKSKVRRSRLTADEYLKIYQAAESSP--------CWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKI 74 (190)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHGGGSC--------HHHHHHHHHHHHSCCCHHHHTTCBGGGEETTEEEEECTTTCCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCHHH--------HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEECCCCCCEE
T ss_conf 1222222223330366764202210022--------78899999999807653344545420231242000014678513
Q ss_pred C-CCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHH
Q ss_conf 0-001--1221002343221110012344665543211112211100012356789997686--9998805417999999
Q gi|254780882|r 198 R-IVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATH 272 (328)
Q Consensus 198 R-~Vp--i~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi--~~~~spH~lRHtfAt~ 272 (328)
. .++ ........+..+.. .........+|+...|.+.........+......... ....++|.+||+|||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~ 150 (190)
T 1z19_A 75 AIPTALHIDALGISXKETLDK----CKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLSAR 150 (190)
T ss_dssp EEETTCEETTTTEEHHHHHHH----HHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHH----HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 311363014678888888876----4025776420121112110026777899999998477767899973849999999
Q ss_pred HHHCCCCHHHHHHHHCCCCHHHHHH-HHHHCHHHHH
Q ss_conf 9984899889999837888789799-9961989999
Q gi|254780882|r 273 LLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGG 307 (328)
Q Consensus 273 ll~~G~~~~~v~~~lGH~s~~tT~~-Y~h~~~~~~~ 307 (328)
|+++|+|+.+||++|||+|++||++ |.|++.+..+
T Consensus 151 l~~~g~~~~~i~~~lGH~~~~~T~~~Y~~~~~~~~~ 186 (190)
T 1z19_A 151 LYEKQISDKFAQHLLGHKSDTXASQXRDDRGREWDK 186 (190)
T ss_dssp HHHHHTCHHHHHHHHTCSSSCC----------CCCC
T ss_pred HHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
T ss_conf 998698999999994899889999985274858999