HHsearch alignment of GI: 254780882 and MMDB domain: 2a3v_A_95-144_243-320
>2a3v_A (A:95-144,A:243-320) Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.95 E-value=2.9e-29 Score=201.67 Aligned_cols=121 Identities=38% Similarity=0.590 Sum_probs=108.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 22222121111111015678776531013567757753201222100112332222211222223323220332378531
Q gi|254780882|r 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 118 ~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~ 197 (328)
.||.++++|++|+.+|+..+++++ ..||++|+.+||.||||+||+++|+|.
T Consensus 1 rpk~~~~lp~~l~~~e~~~ll~~~-----------~~r~~~~~~ll~~~GlR~~E~~~l~~s------------------ 51 (128)
T 2a3v_A 1 RSQLERKLPVVLTRDEIRRLLEIV-----------DPKHQLPIKLLYGSGLRLMECMRLRVN------------------ 51 (128)
T ss_dssp CCCCCCCCCCCCCHHHHHHHTTSS-----------CHHHHHHHHHHHHSCCCHHHHHTCBGC------------------
T ss_pred HHHHHCCCCCCCHHHHHHHCCCCC-----------CHHHHHHHHHHHHHCCCCCCCCCCHHC------------------
T ss_conf 100000122231035542000000-----------025888999987500122333331116------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 00011221002343221110012344665543211112211100012356789997686999880541799999999848
Q gi|254780882|r 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 (328)
Q Consensus 198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G 277 (328)
.++++++++++++++|++.+++||+|||||||+|+++|
T Consensus 52 ------------------------------------------~~~i~~~~k~~~~~agi~~~~~~H~lRHT~aT~l~~~G 89 (128)
T 2a3v_A 52 ------------------------------------------ETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVG 89 (128)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf ------------------------------------------89999999999998599999987114999999999878
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 99889999837888789799996198999999
Q gi|254780882|r 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 (328)
Q Consensus 278 ~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~ 309 (328)
+|+..||++|||+|++||++|+|++++..+++
T Consensus 90 ~~~~~i~~~lGHss~~~t~~Y~h~~~~~~~~~ 121 (128)
T 2a3v_A 90 ADIRTVQEQLGHTDVKTTQIYTHVLDRGASGV 121 (128)
T ss_dssp CCHHHHHHHHTCSSHHHHGGGCC------CCC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999998848999899999884699899998