HHsearch alignment of GI: 254780882 and MMDB domain: 2kd1_A_
>2kd1_A (A:) DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.65 E-value=3.9e-16 Score=119.72 Aligned_cols=113 Identities=8% Similarity=0.097 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998625488999999999999999998512147887896898999999999999861210133211
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~ 90 (328)
..++.++++.|+++++ +++|++|+++|+..++.|+.|+. +..++.+|+..+|++|+.++..+|+|++|+++
T Consensus 5 ~~t~~~~~~~~l~~~~--~~~s~~T~~~y~~~l~~~~~~~~-------~~~~i~~i~~~~i~~~~~~l~~~g~s~~t~~~ 75 (118)
T 2kd1_A 5 KLSYGEYLESWFNTKR--HSVGIQTAKVLKGYLNSRIIPSL-------GNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEK 75 (118)
T ss_dssp CSBHHHHHHHHHHHHH--HHHCHHHHHHHHHHHTTTHHHHT-------TSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH-------CCEEHHHCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 0689999999999984--73899999999999998762885-------78079998999999999998863148999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 234442222333210123222222222222221211111110
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~ 132 (328)
+++.|++||+||+++|++..||+.+++.|+.++..++++|+|
T Consensus 76 ~~~~l~~~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~E 117 (118)
T 2kd1_A 76 IIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHHHHH 117 (118)
T ss_dssp HHHHHHHHHHHHHHTTSCSSCTTTTCCCCSCCCCSSSCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 999999999999988895639184192899999751023667