HHsearch alignment of GI: 254780882 and MMDB domain: 2kj5_A_
>2kj5_A (A:) Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.20 E-value=1.6e-11 Score=90.84 Aligned_cols=107 Identities=9% Similarity=0.065 Sum_probs=88.4
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31498999999999999998625488999999999999999998512147887896898999999999999861210133
Q gi|254780882|r 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 (328)
Q Consensus 8 ~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T 87 (328)
+..+.++.+.++.|+... ++++++|.+.|+..++.++. +.++..++.+++..++..|+..+.+. .+++|
T Consensus 3 ~~~~~tf~~~~~~~l~~~---~~~~~~t~~~~~~~~~~~i~-------~~~g~~~i~~it~~~i~~~~~~l~~~-~~~~t 71 (116)
T 2kj5_A 3 EKNAYTVAQLADEYFERM---IAGRWKHPNIVRSRIEKDIK-------PAIGSLKVEDVKPRHIDDVLKAVMKR-GAPSI 71 (116)
T ss_dssp SSSCCBHHHHHHHHHHHH---TTTSCSCHHHHHHHHHHTTS-------CSGGGSBSSSCCHHHHHHHHHHHHHH-TCHHH
T ss_pred CCCCCHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH-------HHHCCCCHHHHCHHHHHHHHHHHHHH-CCHHH
T ss_conf 766552999999999987---46788719999999998979-------98879867870647789998887640-23168
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21123444222233321012322222222222222121
Q gi|254780882|r 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 (328)
Q Consensus 88 ~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~ 125 (328)
+++.++.|+++|+||++.|+++.||+.+++.|+..++.
T Consensus 72 ~~~~~~~l~~~f~~Av~~~~i~~NP~~~i~~~~~~~~~ 109 (116)
T 2kj5_A 72 ANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGGKL 109 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSCGGGGSCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999998789567973469723589731