HHsearch alignment of GI: 254780882 and MMDB domain: 2kj5_A_

>2kj5_A (A:) Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.20  E-value=1.6e-11  Score=90.84  Aligned_cols=107  Identities=9%  Similarity=0.065  Sum_probs=88.4

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31498999999999999998625488999999999999999998512147887896898999999999999861210133
Q gi|254780882|r    8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS   87 (328)
Q Consensus         8 ~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T   87 (328)
                      +..+.++.+.++.|+...   ++++++|.+.|+..++.++.       +.++..++.+++..++..|+..+.+. .+++|
T Consensus         3 ~~~~~tf~~~~~~~l~~~---~~~~~~t~~~~~~~~~~~i~-------~~~g~~~i~~it~~~i~~~~~~l~~~-~~~~t   71 (116)
T 2kj5_A            3 EKNAYTVAQLADEYFERM---IAGRWKHPNIVRSRIEKDIK-------PAIGSLKVEDVKPRHIDDVLKAVMKR-GAPSI   71 (116)
T ss_dssp             SSSCCBHHHHHHHHHHHH---TTTSCSCHHHHHHHHHHTTS-------CSGGGSBSSSCCHHHHHHHHHHHHHH-TCHHH
T ss_pred             CCCCCHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH-------HHHCCCCHHHHCHHHHHHHHHHHHHH-CCHHH
T ss_conf             766552999999999987---46788719999999998979-------98879867870647789998887640-23168


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21123444222233321012322222222222222121
Q gi|254780882|r   88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL  125 (328)
Q Consensus        88 ~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~  125 (328)
                      +++.++.|+++|+||++.|+++.||+.+++.|+..++.
T Consensus        72 ~~~~~~~l~~~f~~Av~~~~i~~NP~~~i~~~~~~~~~  109 (116)
T 2kj5_A           72 ANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGGKL  109 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCSSCGGGGSCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88999999999999998789567973469723589731